PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_15459-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 258aa    MW: 29134.1 Da    PI: 7.6695
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_15459-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH482.2e-1554113455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...........TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkas........kapskKlsKaeiLekAveYIksLq 55 
                       hn  E+rRR +iN+++  L++l+P++s        + +    +Ka++L  A+eY+k+Lq
  TRIUR3_15459-P1  54 VHNLSEKRRRCKINEKMKALQSLVPNSSklieamlyGRRRLQTDKASMLDDAIEYLKHLQ 113
                      6*************************888*****97777777*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.105.1E-1748122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-1648122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.57750112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.05E-1453117No hitNo description
PfamPF000105.6E-1354113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-1356118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MDQEHLDFIM RHHHHQGGMG FVPADRGDSE EALGSSESEP AGRPRGKRAR AAEVHNLSEK  60
RRRCKINEKM KALQSLVPNS SKLIEAMLYG RRRLQTDKAS MLDDAIEYLK HLQLQVQGKH  120
QCINLSSIAM LCRISICVLI AITLPDAVHE EWHVSSLSEL TRSSWPSANI ANMIFQEEAM  180
LKHWLCSTQE TASVPGHEMK PVRQETPAAR AGHFDTCSIW KNQPQDMVPN NTESILFVPH  240
LQRFQNSNAD SGLRAESK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3606561e-125AK360656.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1122L11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165312.11e-95transcription factor SPATULA-like isoform X1
TrEMBLM7ZHH10.0M7ZHH1_TRIUA; Transcription factor SPATULA
STRINGTRIUR3_15459-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33363776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.17e-21bHLH family protein