PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_15106-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 684aa    MW: 76227.4 Da    PI: 9.3453
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_15106-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.29.2e-161972741699
                      EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                       v+p +fa+++ gk   ++t++le ++g  ++v +  + +++r v+++GW+ Fv+an++ ++D+++F++ g+s+f  +v vf++
  TRIUR3_15106-P1 197 KVIPERFAKHFAGK--MPRTVKLEGPNGILYDVGV--TEHRNRKVIQSGWEVFVDANDIVQKDSLMFRYRGSSRF--KVAVFDS 274
                      69******888888..5569***************..********************************998888..9999986 PP
2B3345.4e-114585411599
                      -EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
               B3  15 rlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                       l++ k++a +h   ++es  ++l+ +   ++W  ++ y+++++ + +++ W +Fv +n ++egD+++F   +   +f+++v+++r+
  TRIUR3_15106-P1 458 SLTIMKEYAVAHF--PHESASVILQRPGEnKRWYPRF-YEGNDSIHKIRGEWLDFVCDNSVEEGDICIFVPAKGgGRFTFTVHLLRA 541
                      48999****9997..446778999995555*******.8999999*************************776669**9**999986 PP
3B358.11.6e-186136812999
                      -..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
               B3  29 kkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                      +kee    +l +++g++W+ ++ +r++++r vl++GW++Fv++n+L++gD+++F+l+++ ++ ++ v+++++
  TRIUR3_15106-P1 613 PKEE--RTILLQRKGKEWQTQMHIRNGRRR-VLEGGWRKFVSDNRLRVGDICLFELKRNrRKLTMIVHIISR 681
                      3333..4677889*********77777766.7999**********************998*******99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010192.2E-7195275IPR003340B3 DNA binding domain
SuperFamilySSF1019361.53E-17196277IPR015300DNA-binding pseudobarrel domain
PfamPF023621.9E-13197274IPR003340B3 DNA binding domain
PROSITE profilePS5086311.97198275IPR003340B3 DNA binding domain
CDDcd100171.90E-15198273No hitNo description
Gene3DG3DSA:2.40.330.101.7E-17198277IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.7E-16436542IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.28E-15438542IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.024443542IPR003340B3 DNA binding domain
CDDcd100172.42E-13443537No hitNo description
PROSITE profilePS5086310.588444542IPR003340B3 DNA binding domain
PfamPF023628.0E-9458541IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.1E-21577682IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-19578684IPR015300DNA-binding pseudobarrel domain
CDDcd100178.07E-19582680No hitNo description
PROSITE profilePS5086313.239584682IPR003340B3 DNA binding domain
SMARTSM010191.9E-9584682IPR003340B3 DNA binding domain
PfamPF023623.3E-17606681IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 684 aa     Download sequence    Send to blast
MVFGSNNGKG KGKGKGTLDA SSSRAPLPPP SPPAATRFRP GRRRLHIPVH QARWHWEYRQ  60
LLPYPDVTLP HRWHLDPQRI PVPAVPRTQR DDKVTSQDII TALAWHLCLL AFAPLLGCYG  120
NTKRLISGGQ FSPVQVNESP TFSSASVSPR PSQFSRLSSS FQLQRTVTVI AGSGLDCSAK  180
PGLQEDLEDT SEIPYCKVIP ERFAKHFAGK MPRTVKLEGP NGILYDVGVT EHRNRKVIQS  240
GWEVFVDAND IVQKDSLMFR YRGSSRFKVA VFDSSGCEKT VPCFGIGSSM SDQPITNSTG  300
MSGSSSDRNT HSSMGQQSDG CQSESSGHCR KLAWTDAASS PSEDLPGEDS PYEHESSGSD  360
DHTLPKMIST VRIKEEQCSD ASGRSDGCHS GSTRKTAVIS TPSAESGPPK DKYVLSSRSN  420
LADAQKEKID KLLQDVQSRT LAFVAIMRKS NVQPPYPSLT IMKEYAVAHF PHESASVILQ  480
RPGENKRWYP RFYEGNDSIH KIRGEWLDFV CDNSVEEGDI CIFVPAKGGG RFTFTVHLLR  540
AESKAHAGHF VPPYMLSQMS FLSPLQQSIV EDKAEAIQLE AHLYVAIMNK TNVGVKGHYS  600
LEFGAKYAAV YLPKEERTIL LQRKGKEWQT QMHIRNGRRR VLEGGWRKFV SDNRLRVGDI  660
CLFELKRNRR KLTMIVHIIS RDEC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1664671LKRNRRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3732050.0AK373205.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3023K17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020171944.10.0B3 domain-containing protein Os03g0619600-like
TrEMBLT1MBV50.0T1MBV5_TRIUA; Uncharacterized protein
STRINGTRIUR3_15106-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-13B3 family protein