PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_14835-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HD-ZIP
Protein Properties Length: 818aa    MW: 89469.9 Da    PI: 5.9124
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_14835-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.25.7e-182380356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHH CS
         Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakek 56
                     k  ++t+eq+e+Le++++ +++p+ ++r++L +++    +++ rq+kvWFqNrR ++k
  TRIUR3_14835-P1 23 KYVRYTPEQVETLERVYADCPKPTSSRRQQLLRECpilaNIEARQIKVWFQNRRCRDK 80
                     5678***************************************************998 PP
2START154.49.3e-491613682204
                      HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEE CS
            START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galql 93 
                      +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++++ve+l d++  W +++++ e+  v+  +  g+++l
  TRIUR3_14835-P1 161 IAEETLTEFLSKATGTAIEWVQMPGMKPGPDSVGIVAISHGCRGVAARACGLVNLEPTKVVEILKDRP-SWFRDCRSLEVFTVLPGAngGTIEL 253
                      789*******************************************************9999988888.***************98788***** PP

                      EEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHH CS
            START  94 mvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrs 183
                       +++l+a+++lvp Rdf+++Ry+   ++g++v++++S++     p+    +++vRae+lpSg+l++p+++g+s v++v+h + +++ ++++lr+
  TRIUR3_14835-P1 254 VYTQLYAPTTLVPaRDFWTLRYTTIVEDGSLVVCERSLSGSGGGPSaasAQQFVRAEMLPSGYLVRPCDGGGSIVHIVDHLEFEAWNIPEVLRP 347
                      ***************************************9999999898899****************************************** PP

                      HHHHHHHHHHHHHHHHTXXXX CS
            START 184 lvksglaegaktwvatlqrqc 204
                      l++s+++ ++k+++a+l++ +
  TRIUR3_14835-P1 348 LYESSRVVAQKMTTAALRHIR 368
                      *****************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.4E-18580IPR009057Homeodomain-like
PROSITE profilePS5007115.0621882IPR001356Homeobox domain
SMARTSM003892.0E-152086IPR001356Homeobox domain
CDDcd000866.66E-162380No hitNo description
SuperFamilySSF466891.07E-142382IPR009057Homeodomain-like
PfamPF000461.9E-152480IPR001356Homeobox domain
PROSITE profilePS5084826.466151379IPR002913START domain
CDDcd088751.88E-71155371No hitNo description
SuperFamilySSF559613.71E-36160372No hitNo description
SMARTSM002341.5E-36160370IPR002913START domain
Gene3DG3DSA:3.30.530.203.7E-19160346IPR023393START-like domain
PfamPF018521.9E-46161368IPR002913START domain
PfamPF086706.7E-10647692IPR013978MEKHLA
PfamPF086707.5E-29719817IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 818 aa     Download sequence    Send to blast
MAMRGGSSDG GGSDRGAGMD SGKYVRYTPE QVETLERVYA DCPKPTSSRR QQLLRECPIL  60
ANIEARQIKV WFQNRRCRDK LRKESSRLES VNRKVSAMNK LLMEENERLQ KQVSQLVHEN  120
AQVRQQLQNT SMANDASCES NVTAPQNPIR DASNPSGLLS IAEETLTEFL SKATGTAIEW  180
VQMPGMKPGP DSVGIVAISH GCRGVAARAC GLVNLEPTKV VEILKDRPSW FRDCRSLEVF  240
TVLPGANGGT IELVYTQLYA PTTLVPARDF WTLRYTTIVE DGSLVVCERS LSGSGGGPSA  300
ASAQQFVRAE MLPSGYLVRP CDGGGSIVHI VDHLEFEAWN IPEVLRPLYE SSRVVAQKMT  360
TAALRHIRQI AQETSGEVVY ALGRQPAVLR TFSQRLSRGF NDAISGFNDD GWSIMAGDGI  420
EDVVVACNST KKIRSISNGV NAFEAPGGTI CAKASMLLQS VPPAILVRFL REHRSEWADY  480
SMDAYLASAL KTSTCSFPGL RPMRFSGSQI IMPLAHTVEN EEILEVVRLE GQPLSHDEVL  540
LSRDIDMLQD VVSSGRTLDL ASSLEVGSTA AQASGASPDD CSVRSVLTIA FQFPYELHLQ  600
DSVAAMARQY VRSIVSAVQR VSIAISPSQS GLNAGQRILS GLPEAATLAR WICQSYHYHL  660
GVELLTQSDV AGEALLKMLW HYQDAILCCS FKFWGTYSVA GWCIDGPACC SCYMSFSSYT  720
EVPVFTFANK AGLDMLETSL VALQDLTLDK IFDEPGRKAL FSEISKLVEE GHVYLPSGVC  780
MSGMGRHVSF DQAVAWKVLG EDSSVHCLAL CFVNWSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1023780.0AK102378.1 Oryza sativa Japonica Group cDNA clone:J033091P14, full insert sequence.
GenBankAY4259910.0AY425991.1 Oryza sativa (japonica cultivar-group) homeodomain leucine-zipper protein Hox10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020162053.10.0homeobox-leucine zipper protein HOX10
SwissprotA2XBL90.0HOX10_ORYSI; Homeobox-leucine zipper protein HOX10
TrEMBLM7ZSI60.0M7ZSI6_TRIUA; Homeobox-leucine zipper protein HOX10
STRINGTRIUR3_14835-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein