PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_14819-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family AP2
Protein Properties Length: 383aa    MW: 42473.5 Da    PI: 9.5202
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_14819-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP225.43.5e-0835691655
              AP2 16 vAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                      Ae+rd      + k+++lg f+ta  Aa+a+++a+ k++g
  TRIUR3_14819-P1 35 IAECRD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 69
                     79****......55************************997 PP
2AP240.85.4e-13112162155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV+ +k  grW+A+   +     +k+++lg f+ + eAa+a+++a+ k +g
  TRIUR3_14819-P1 112 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDNEVEAARAYDKAAIKCNG 162
                      89********.7******5553..2.26**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103212.0231777IPR001471AP2/ERF domain
SMARTSM003801.5E-143383IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-123478IPR001471AP2/ERF domain
SuperFamilySSF541715.23E-103478IPR016177DNA-binding domain
CDDcd000181.22E-25112172No hitNo description
PfamPF008474.1E-8112162IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-17112171IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.1E-16113170IPR001471AP2/ERF domain
PROSITE profilePS5103215.277113170IPR001471AP2/ERF domain
SMARTSM003801.9E-31113176IPR001471AP2/ERF domain
PRINTSPR003673.5E-6114125IPR001471AP2/ERF domain
PRINTSPR003673.5E-6152172IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MELDLNVEEK PAAVARSDSG TSESSFLQIF LLLFIAECRD CGKQVYLGGF DTAHAAARAY  60
DRAAIKFRGV DADINFNLSD YEDDMKQMKG LSKEEFVHVL RRQSTGFSRG SSKYRGVTLH  120
KCGRWEARMG QFLGKKYIYL GLFDNEVEAA RAYDKAAIKC NGREAVTNFE PSTYDAELLN  180
EVAAEGADVD LNLSISQPTS QSPKRDKSSL GLQLHHGSYD GSELKRPKAS TNAFFKRLGN  240
QSNFTAGFVD APPEMVAIPH RYPLLTEHPP IWHGQSYPLF LNNEVRKQPE IIAGGQRWPQ  300
GLFQPGHGGI IRILQNRRGS CPRRPIGLIP LRPDGAIIIV KQPTPPPPPP LKKKPYCKFS  360
GKPVSFCPSG VSAFSVLRRG GFM
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5773680.0AJ577368.1 Triticum aestivum partial mRNA for putative APETALA2 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020170161.11e-147floral homeotic protein APETALA 2-like isoform X1
SwissprotB8AXC31e-122AP21_ORYSI; APETALA2-like protein 1
TrEMBLM8A1110.0M8A111_TRIUA; Floral homeotic protein APETALA 2
STRINGTRIUR3_14819-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100832935
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.33e-80related to AP2.7