PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_14675-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 624aa    MW: 67490.7 Da    PI: 5.5583
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_14675-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS140.12.2e-433494821133
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkf 93 
                      lv+lLl+cA++vs+gd+  a + L  l+  asp gd+mqR+a+yf+ ALa+rl+  s++ ++   +  + +   s ++l++++++++++P++kf
  TRIUR3_14675-P1 349 LVHLLLACADFVSKGDQPSALRHLHLLRRVASPLGDSMQRVASYFADALATRLSVsSGTAISPRGAGAPYPFPPSPDTLKIYQILYQACPYIKF 442
                      68***************************************************9845555555444444444459******************* PP

             GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLa 133
                      +h+taNqaI ea++ge+rvH++D+di qG QWpa+lqaLa
  TRIUR3_14675-P1 443 AHFTANQAIFEAFHGEDRVHVVDLDILQGYQWPAFLQALA 482
                      ***************************************9 PP
2GRAS1755.5e-54483623235374
             GRAS 235 sPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvp 328
                       Pk++++veqea hn++ Fl rfleal+yysa+fdsl+a++p++s  r+kvE+ ll++ei+nvvacegaer++rhe+l +Wr+ +e+ GF++vp
  TRIUR3_14675-P1 483 APKIMTLVEQEAGHNGPYFLGRFLEALHYYSAIFDSLDATFPADSAPRMKVEQCLLAPEIRNVVACEGAERVARHERLDRWRRIMEDRGFEAVP 576
                      59******************************************************************************************** PP

             GRAS 329 lsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      ls  a+ q + ll  ++ +dgyr++ee+g+l+lgW+dr+++ +SaWr
  TRIUR3_14675-P1 577 LSPAAVGQSQVLLGLYGaGDGYRLNEEKGCLLLGWQDRAIIGASAWR 623
                      **********************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098526.796323624IPR005202Transcription factor GRAS
PfamPF035147.7E-41349482IPR005202Transcription factor GRAS
PfamPF035141.9E-51483623IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 624 aa     Download sequence    Send to blast
MGTLNCAVDM SSGTKQLQHQ PAAPTSPTAS FSESNIVASS ADPDAIDALA GLQALRFDGD  60
IDGEIQSPDL AMWESLFADQ IGAGAASGAD FLMSSPRRDF SPLRDFMASS PKRDYMVSSP  120
KRDYMMSSPK RDYMVSSPKR EMVASPRRTF SSLYNNSTSQ QSYMHGTLHG MDTGSPSNLA  180
GYGKGKSSQS PLHKGFVNNA HSNSSKSNLS CSSSYVNNSE NLALPSLNSS FLEEGYLAYQ  240
LPPEKDAGGS SSAGTSATQL PTLSECLAMP EPVYGTRDEA AVGRGIQVGG LQPDHLYYAS  300
QFGAADGLPL QHQMAKPDQW ADSSSLHSML GSVIQSDQAE QEQDSGLQLV HLLLACADFV  360
SKGDQPSALR HLHLLRRVAS PLGDSMQRVA SYFADALATR LSVSSGTAIS PRGAGAPYPF  420
PPSPDTLKIY QILYQACPYI KFAHFTANQA IFEAFHGEDR VHVVDLDILQ GYQWPAFLQA  480
LAAPKIMTLV EQEAGHNGPY FLGRFLEALH YYSAIFDSLD ATFPADSAPR MKVEQCLLAP  540
EIRNVVACEG AERVARHERL DRWRRIMEDR GFEAVPLSPA AVGQSQVLLG LYGAGDGYRL  600
NEEKGCLLLG WQDRAIIGAS AWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A3e-3135662225377Protein SCARECROW
5b3h_D3e-3135662225377Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1363771e-112AC136377.4 Oryza sativa Japonica Group chromosome 11 clone OSJNBa0028G07, complete sequence.
GenBankAC1377591e-112AC137759.4 Oryza sativa Japonica Group chromosome 11 clone OSJNBb0008H02, complete sequence.
GenBankAP0149671e-112AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020178448.10.0DELLA protein RGL1-like
TrEMBLT1MAP90.0T1MAP9_TRIUA; Uncharacterized protein
STRINGTRIUR3_14675-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92213141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.12e-39RGA-like 2