![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | TRIUR3_13919-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 105aa MW: 12453.1 Da PI: 9.7465 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 26.7 | 1.4e-08 | 5 | 74 | 2 | 68 |
trihelix 2 WtkqevlaLiea..rremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikege 68 Wt++ ++ ++e+ ++ + ++ ++ l +ev+k +++g+e +pkq+++kw +l+++y k+ + TRIUR3_13919-P1 5 WTDENTRIIVELfvKQVKVGNMPSTHLTPSAYDEVGKEFlMRTGLEYTPKQVRNKWTKLKREYNTFKKLK 74 99999999988622556666777889999******98766**********************99887755 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF12776 | 7.6E-24 | 4 | 98 | IPR024752 | Myb/SANT-like domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 105 aa Download sequence Send to blast |
GSAEWTDENT RIIVELFVKQ VKVGNMPSTH LTPSAYDEVG KEFLMRTGLE YTPKQVRNKW 60 TKLKREYNTF KKLKLRETGG GWDFEKNIVK QDNEWWKNTV KQDNE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 1e-151 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020163124.1 | 3e-64 | L10-interacting MYB domain-containing protein-like | ||||
TrEMBL | T1M8N1 | 1e-70 | T1M8N1_TRIUA; Uncharacterized protein | ||||
STRING | TRIUR3_13919-P1 | 2e-71 | (Triticum urartu) |