PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_13796-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C2H2 | ||||||||
Protein Properties | Length: 506aa MW: 55286.2 Da PI: 5.7388 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 20.5 | 1.3e-06 | 264 | 285 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C +Cgk F+r nL+ H+r H TRIUR3_13796-P1 264 FCVICGKGFKRDANLRMHMRGH 285 6*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 6.6E-5 | 261 | 288 | No hit | No description |
SMART | SM00355 | 0.015 | 263 | 285 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.614 | 263 | 290 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 3.9E-5 | 264 | 289 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 265 | 285 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 68 | 312 | 345 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 22 | 350 | 372 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010044 | Biological Process | response to aluminum ion | ||||
GO:0010447 | Biological Process | response to acidic pH | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 506 aa Download sequence Send to blast |
MASDASGNTD PGQQGARFSS MDQSCFARPG QSIPGYPPFF GPQSSNFYLP DDSVAKACDP 60 FEPNPPQNNP VADWDPQAML SNLTFLEQKI KQVKDIVQSM GNRGSQDVGG SCELAAKQQL 120 VTADLTSIII QLISTAGSML PSMKTPLLSS NPAVRQLNTP GSPMGFGSIV NQRPSTVREE 180 MVPDITKTPD YEDLMNTLNP AHDEKDDLIK CPNPCVGEGP EPVPMEDHDV KESDDGGEAE 240 HLPPGSYVVL QLEKEEILAP HTHFCVICGK GFKRDANLRM HMRGHGDEYK TPAALAKPMR 300 DSVSDPTPVT RYSCPYVGCK RNKEHRKFQP LKTILCVKNH YKRSHCDKRY TCSRCNTKKF 360 SVIADLKTHE KHCGRDKWLC SCGTTFSRKD KLFGHVALFQ GHTPALPMDD IKATGALEQP 420 QGSEAMDDMV GSTGYNFPGS TSDGIPNLDM KVADDTRGYF SPLNFDPCFG ALDDFARPGF 480 DISENPFSFL PSGPGSCSFG QLSGDS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00196 | ampDAP | Transfer from AT1G34370 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF034793 | 0.0 | KF034793.1 Triticum aestivum isolate A cultivar Barbela 7/72/92 STOP1 gene, complete cds. | |||
GenBank | KF034796 | 0.0 | KF034796.1 Triticum aestivum isolate A cultivar Anahuac STOP1 gene, complete cds. | |||
GenBank | KF034801 | 0.0 | KF034801.1 Triticum aestivum isolate A cultivar Viloso Mole STOP1 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020166559.1 | 0.0 | zinc finger protein STOP1 homolog | ||||
Swissprot | Q943I6 | 0.0 | STOP1_ORYSJ; Zinc finger protein STOP1 homolog | ||||
TrEMBL | M8A301 | 0.0 | M8A301_TRIUA; Zinc finger protein STOP1-like protein | ||||
STRING | TRIUR3_13796-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1512 | 38 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34370.2 | 1e-155 | C2H2 family protein |
Publications ? help Back to Top | |||
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