PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_13571-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 521aa    MW: 59939.8 Da    PI: 8.5545
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_13571-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.96.5e-12961761399
                      TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      ++ +++p + +++++ +     +++le+++g    + +   k  ++ ++t GW++Fv   +L+ gD ++F+++g+s+f  +v +f+k
  TRIUR3_13571-P1  96 RDEMIIPEELVRRFKRD--ILGEIKLETRNGDNHAIVV--AKIEEKRIFTVGWRQFVANYDLQIGDLLMFRYKGNSQF--NVIIFDK 176
                      56799*********777..4458***************..888888899*************************9*99..8888875 PP
2B331.82.5e-102463301599
                      -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE......EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  15 rlvlpkkfaeehggkkeesktltledesgrsWevkliy....rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                       +v+p   +++++g+   +++++le+++ rs ++ ++       + ++ v++ GW +Fv+  gL++gD++v+ ++g+s+f   v +f+k
  TRIUR3_13571-P1 246 EMVIPEGILQRFKGE--FPREIKLETQNRRSNKIGVTEnkldICYNQKLVFSVGWGKFVETFGLQTGDTIVLIYNGNSQF--SVIIFDK 330
                      589999999999877..67789999999999999995544532233459***************************9999..8888876 PP
3B345.41.5e-14424513197
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      f+ v+ + +v +   l++p+ +a+++ g++++   +    + g +W+v++   +++g   l+ GWk+Fv+ n+Lk gD+++F+l ++ + ++vv
  TRIUR3_13571-P1 424 FVAVMYKCNVESPFFLTFPNYYAQKYLGEEAR---MH-LELLGVKWQVRF--PNNRGDKKLKHGWKQFVQGNNLKMGDICLFELLSN-QSTMVV 510
                      5667777788888999**********666443...33.34678*******..99999999***********************9985.555788 PP

                      EEE CS
               B3  95 kvf 97 
                       v+
  TRIUR3_13571-P1 511 YVI 513
                      876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.53E-1682176IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.0E-1682176IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.06884177IPR003340B3 DNA binding domain
CDDcd100171.55E-1284175No hitNo description
SMARTSM010191.3E-687177IPR003340B3 DNA binding domain
PfamPF023621.1E-996175IPR003340B3 DNA binding domain
SuperFamilySSF1019361.65E-16229333IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.1E-15229333IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.756232331IPR003340B3 DNA binding domain
CDDcd100171.30E-8233329No hitNo description
SMARTSM010190.0066234331IPR003340B3 DNA binding domain
PfamPF023629.5E-8246330IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.5E-18416512IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-17419512IPR015300DNA-binding pseudobarrel domain
CDDcd100179.03E-15423514No hitNo description
PfamPF023621.1E-13424514IPR003340B3 DNA binding domain
SMARTSM010194.7E-9424516IPR003340B3 DNA binding domain
PROSITE profilePS5086312.746424516IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MEERTPLSVA TSTLAEATWK ENRGRQLVDG RPRPVRETAH GDKGQEKSLV NFLATMACSN  60
GMCTSCECCK RRDEYYYRNL DDEKKYFLVL LIGDFRDEMI IPEELVRRFK RDILGEIKLE  120
TRNGDNHAIV VAKIEEKRIF TVGWRQFVAN YDLQIGDLLM FRYKGNSQFN VIIFDKLGRE  180
KASSVVLDPF IPRVQDRGNE AHEIGSSEKM DVQCGRCNNW LEYHYANLDN ENKYFLMLMM  240
GDFQYEMVIP EGILQRFKGE FPREIKLETQ NRRSNKIGVT ENKLDICYNQ KLVFSVGWGK  300
FVETFGLQTG DTIVLIYNGN SQFSVIIFDK HGCEKALSVI VDPVPPPVQE RRPYGGSLSS  360
EHGQGVRDVP VSSNIVKRKA KLSSSQKEQL RDGYITAHKT KLTLAQKDVV KQKVQSLESK  420
ISIFVAVMYK CNVESPFFLT FPNYYAQKYL GEEARMHLEL LGVKWQVRFP NNRGDKKLKH  480
GWKQFVQGNN LKMGDICLFE LLSNQSTMVV YVIPANDANV D
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020186791.10.0putative B3 domain-containing protein Os08g0325100 isoform X2
SwissprotQ6Z0D92e-51Y8347_ORYSJ; B3 domain-containing protein Os08g0324300
TrEMBLT1M7Q40.0T1M7Q4_TRIUA; Uncharacterized protein
STRINGTRIUR3_13571-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124821536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.19e-24B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]