PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_13330-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 411aa    MW: 46157.4 Da    PI: 8.0054
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_13330-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.11.1e-06427226
                     -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                     k++lC+ff+  G C  G+ C F+H+
  TRIUR3_13330-P1  4 KRVLCKFFMH-GACLKGEYCEFSHD 27
                     89****8888.*************5 PP
2zf-CCCH27.84.3e-093555526
                     --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                      C f++r G C+yG+rC++ H+
  TRIUR3_13330-P1 35 VCTFYQR-GSCSYGNRCRYDHV 55
                     5999999.*************7 PP
3zf-CCCH21.63.7e-07166188326
                      S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                      +++C+ fa++G C+yG+ C+ +Hg
  TRIUR3_13330-P1 166 MPICS-FAAGGNCPYGEECPHMHG 188
                      68999.**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF156631.2E-7161No hitNo description
PROSITE profilePS5010314.22229IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-5228IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-7327IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.9E-4430IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.2673057IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-53254IPR000571Zinc finger, CCCH-type
SMARTSM003565.5E-43256IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-43554IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.76163190IPR000571Zinc finger, CCCH-type
SMARTSM003560.015163189IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-4166188IPR000571Zinc finger, CCCH-type
SuperFamilySSF578501.33E-12221296No hitNo description
Gene3DG3DSA:3.30.40.101.2E-9225291IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001628.40E-4231291No hitNo description
PfamPF136394.1E-7231290IPR001841Zinc finger, RING-type
SMARTSM001842.9E-7232289IPR001841Zinc finger, RING-type
PROSITE profilePS5008912.297232290IPR001841Zinc finger, RING-type
PROSITE patternPS005180256265IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010313.648319348IPR000571Zinc finger, CCCH-type
SMARTSM003560.01319347IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0016874Molecular Functionligase activity
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MSTKRVLCKF FMHGACLKGE YCEFSHDWSD QANNVCTFYQ RGSCSYGNRC RYDHVKVSRN  60
NPVPPLPSSS IATRNSPVRP PPSSSTATHV ASTSPQLLSS GRPLHLGHQT NSSNQRQQIS  120
MDKLAVSESK PAWRNEVQLD SVSEDGIGWS SIQTAQNQTS MKLADMPICS FAAGGNCPYG  180
EECPHMHGDL CAFCGKMCLH PYRPDERQEH IKLCEKNHKR LEALKRSQEI ECSVCLDRVL  240
SKPTAAERKF GLLSECDHPF CISCIRNWRG NSPTSGMDVN SALRACPICR KLSYYVIPSV  300
LWYFSKEEKL EITENYKAKL KSIDCKYFDF GTGTCPFGTS CFYKHAYRDG RLEEVVLRHL  360
DCDDGSTLIA KNIRSLLANA ENSKFAAGYL DDLVALLTSE TMEKKLCREY A
Functional Description ? help Back to Top
Source Description
UniProtE3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2481880.0AK248188.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf156g01, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020148368.10.0E3 ubiquitin-protein ligase makorin-like isoform X1
RefseqXP_020148370.10.0E3 ubiquitin-protein ligase makorin-like isoform X2
RefseqXP_020148371.10.0E3 ubiquitin-protein ligase makorin-like isoform X3
SwissprotQ5ZA070.0C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin
TrEMBLM7Z2600.0M7Z260_TRIUA; E3 ubiquitin-protein ligase makorin
STRINGTRIUR3_13330-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53263356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-115C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sahi VP, et al.
    A molecular insight into Darwin's "plant brain hypothesis" through expression pattern study of the MKRN gene in plant embryo compared with mouse embryo.
    Plant Signal Behav, 2012. 7(3): p. 375-81
    [PMID:22499205]
  3. Wadekar HB,Sahi VP,Morita EH,Abe S
    MKRN expression pattern during embryonic and post-embryonic organogenesis in rice (Oryza sativa L. var. Nipponbare).
    Planta, 2013. 237(4): p. 1083-95
    [PMID:23262670]