PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_13261-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 561aa    MW: 59878.2 Da    PI: 5.1321
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_13261-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3082.2e-941225131373
             GRAS   1 lvelLlecAeavss..gdlelaqalLarlsel.aspdgd....pmqRlaayfteALaarlar..svselykalppsetseknsseelaalklfs 85 
                      l +lL+++Aea+s   ++ ela+ +L rl+e+ +s +g+    +m+Rlaa+ft AL+  l +  sv +++++ ++ +++++++ ++l+a+++++
  TRIUR3_13261-P1 122 LLHLLMAAAEALSGphKSRELARVILVRLKEMvSSTSGNagasNMERLAAHFTDALQGLLDGshSVAGTSRQASMAASHHHSTGDVLTAFQMLQ 215
                      579**********8557777************555555566669****************995566677777788888888899********** PP

             GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeelgvpfe 177
                      ++sP++kf+h+taNqaIleav+g++rvHi+D+d+ +G+QW++L+qa++sRp   +pp+lRiT++ ++  g +++++e g+rLa fA ++g pf+
  TRIUR3_13261-P1 216 DMSPYMKFGHFTANQAILEAVAGDRRVHIVDYDLAEGIQWASLMQAMTSRPdgVSPPHLRITAITRSGGGGARAVQEAGRRLAAFAGSIGQPFS 309
                      ***************************************************6666***********7777************************ PP

             GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadh..nse........sFlerflea 260
                      f     ++ e +++ + r+ +gE+l+ n++l+       +v  +     ++L  + sl +kvv+vve+e +   n+e         F+ rf+e 
  TRIUR3_13261-P1 310 FGHCRLDSDERFRPATVRMVKGETLVANCILHQAAAT-TTVRRPTgSVASFLTGMASLGAKVVTVVEEEGEAekNEEeasdaaagGFVGRFMEE 402
                      **99999**********************99665554.333333347899******************97763255599999999********* PP

             GRAS 261 leyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee 354
                      l+ ysa+ dslea++p++s+ r  vEr++l+++i  +v+ + +    + e  + W e+++ +GF+ vpls ++ +qa+lll  ++ dgy+vee 
  TRIUR3_13261-P1 403 LHRYSAVWDSLEAGFPTQSRVRGLVERVILAPNIAGAVSRAYRG--TDGEGRRGWGEWMRGSGFEMVPLSCFNHSQARLLLGLFN-DGYTVEET 493
                      ***************************************99887..899999*********************************.******87 PP

             GRAS 355 .sgslvlgWkdrpLvsvSaW 373
                        + +vlgWk r+L+s+S+W
  TRIUR3_13261-P1 494 rPNKIVLGWKARRLLSASVW 513
                      367788************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098550.00896494IPR005202Transcription factor GRAS
PfamPF035147.6E-92122513IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 561 aa     Download sequence    Send to blast
MDVTMEDVVG DLEISGYSSI STSPSSSLDD GMGLYGWNAL SPVADWGLFS SDDGGHDLHG  60
LIESMLCDDA LIGKPDEHPT MFTDGPCYSN ASEPSSTTTT NPGTPVQHDD TPDCNPEKGL  120
RLLHLLMAAA EALSGPHKSR ELARVILVRL KEMVSSTSGN AGASNMERLA AHFTDALQGL  180
LDGSHSVAGT SRQASMAASH HHSTGDVLTA FQMLQDMSPY MKFGHFTANQ AILEAVAGDR  240
RVHIVDYDLA EGIQWASLMQ AMTSRPDGVS PPHLRITAIT RSGGGGARAV QEAGRRLAAF  300
AGSIGQPFSF GHCRLDSDER FRPATVRMVK GETLVANCIL HQAAATTTVR RPTGSVASFL  360
TGMASLGAKV VTVVEEEGEA EKNEEEASDA AAGGFVGRFM EELHRYSAVW DSLEAGFPTQ  420
SRVRGLVERV ILAPNIAGAV SRAYRGTDGE GRRGWGEWMR GSGFEMVPLS CFNHSQARLL  480
LGLFNDGYTV EETRPNKIVL GWKARRLLSA SVWAPPPLSV PSSPADGVCQ PMGMAPSSGG  540
FGRTEYDYVD SFLVEPAYAL V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A4e-5116451553379Protein SCARECROW
5b3h_D4e-5116451553379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020151677.10.0nodulation-signaling pathway 2 protein-like
SwissprotQ5NE241e-158NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLM8A5U00.0M8A5U0_TRIUA; Uncharacterized protein
STRINGTRIUR3_13261-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75803148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-98GRAS family protein
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]