PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_13028-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

Protein Properties

Length: 298aa MW: 33656.6 Da PI: 9.6428

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_13028-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	59.1	8e-19	139	228	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+k++++s+v++ +l lp +f+++h ++ ++ +++lede+g +++ + +++ + l++GW++F ++L++gD++vF+l + ++f ++ TRIUR3_13028-P1 139 FVKTMVRSHVSSCFWLGLPSSFCKDHL-PP-REHKMVLEDEEGVEFDAVY--IGNRTG--LSGGWRGFSMHHDLEDGDSLVFELAEPDRF--KI 224 89*******************9994.44.4459***********..555444..*********************9876777..77 PP EEE- CS B3 95 kvfr 98 +f+ TRIUR3_13028-P1 225 YIFK 228 7776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	5.1E-22	131	229	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.31E-24	132	228	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.32E-27	137	228	No hit	No description
PROSITE profile	PS50863	12.774	139	230	IPR003340	B3 DNA binding domain
SMART	SM01019	1.5E-23	139	230	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.8E-17	139	228	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MATAEAGSAS GAGAAYEEER RKRILDNLKH LEDLGISKMA KSLIQATRQQ DKTPRASPKS 60 RKKFEATTEV RRSSRARTTV SYKDDFPELD DFVRRRRISK SVDNGRGYTG RISSYQQQQR 120 AFKRAEKLQD SLDPDNPSFV KTMVRSHVSS CFWLGLPSSF CKDHLPPREH KMVLEDEEGV 180 EFDAVYIGNR TGLSGGWRGF SMHHDLEDGD SLVFELAEPD RFKIYIFKAI EDGKEAEPND 240 KNTDVDSDSA QEVPDQTDSP VSEPPSSPEP LKGAKRRKLP SSPEPLKGAK RRKLRGRR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	275	292	RRKLPSSPEPLKGAKRRK
2	285	291	LKGAKRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK371930	0.0	AK371930.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2143H22.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020158104.1	0.0	B3 domain-containing protein Os05g0481400
Swissprot	Q5KQI4	1e-130	Y5814_ORYSJ; B3 domain-containing protein Os05g0481400
TrEMBL	A0A446J639	0.0	A0A446J639_TRITD; Uncharacterized protein
TrEMBL	T1M687	0.0	T1M687_TRIUA; Uncharacterized protein
STRING	TRIUR3_13028-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11370	33	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58280.1	1e-43	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349]