PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_12841-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HSF
Protein Properties Length: 266aa    MW: 28059.4 Da    PI: 6.9633
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_12841-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind94.31.3e-29151052101
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      F+ k+y+++ed+ ++  i   + +nsfvv d+  f++++Lp +Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+h sF +g+++ll+
  TRIUR3_12841-P1  15 FVWKTYRMVEDPGTDGGIGGGKGNNSFVVADPFVFSQTMLPAHFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFAHGSFLRGQTHLLR 99 
                      9****************************************************************999.........***************** PP

                      XXXXXX CS
     HSF_DNA-bind  96 kikrkk 101
                      +i r+ 
  TRIUR3_12841-P1 100 NIVRRG 105
                      ***996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004157.0E-4711104IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.5E-3312104IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467856.53E-3012104IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.9E-2615104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.7E-141538IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.7E-145365IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405478IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.7E-146678IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MAAAAASVGG GAAPFVWKTY RMVEDPGTDG GIGGGKGNNS FVVADPFVFS QTMLPAHFKH  60
NNFSSFVRQL NTYGFRKVDP DRWEFAHGSF LRGQTHLLRN IVRRGTAVGG GGGGKRKDAV  120
AAGLTDDDMT MVATEVVRLK KEQNTIDDRV AAMWRRVQET ERKPKQMLAF LLTVVGDRDT  180
LQRLVGNSGN AAGGEQGPVE GGEKRARMLL DGDFGNVSAF GPDAVDFAGF YTDDAFASVP  240
VPVEAAAGPG GGGAGCTFAF GVDSGY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A9e-231510920125Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2346530.0KF234653.1 Triticum aestivum heat shock factor C2a (HsfC2a) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020193636.11e-160heat stress transcription factor C-2b-like
SwissprotQ0DBL61e-116HFC2B_ORYSJ; Heat stress transcription factor C-2b
TrEMBLM7YS710.0M7YS71_TRIUA; Heat stress transcription factor C-2b
STRINGTRIUR3_12841-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44713470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.15e-49heat shock transcription factor C1