PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_12818-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 212aa    MW: 22978.3 Da    PI: 8.7733
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_12818-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH345.1e-112974454
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                      h+e ErrRR+riN+ +++Lr+++P a       ++Ka+ L  +v+ +k+L
  TRIUR3_12818-P1 29 VHSESERRRRERINTHLATLRRMIPDA-----NQMDKATLLACVVNQVKEL 74
                     59************************8.....4799999998888877776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.88E-131680IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.4182574IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.9E-122880IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-82974IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-113180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2607.0E-5111157No hitNo description
SuperFamilySSF550211.31E-5112173No hitNo description
CDDcd048732.24E-5116158No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MATCQAPTSA PELSSSSGRS ATEARSLKVH SESERRRRER INTHLATLRR MIPDANQMDK  60
ATLLACVVNQ VKELKRKATE TTRLQATAPI PPEANEITVH CYTAAGDNRT TYIRATVSCD  120
DRPGLFLGLA GAFRVLGLRV LRTETASLGG RASHLFVLCK EGGDVGAGLR AMEGAVRQAV  180
AEVAFPEMVC GGSSWSKRER ILEECCPVMY SV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13338ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3685370.0AK368537.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2075J21.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020151484.11e-138transcription factor AIG1-like
TrEMBLA0A446IPV31e-153A0A446IPV3_TRITD; Uncharacterized protein
TrEMBLM7Z4741e-153M7Z474_TRIUA; Transcription factor bHLH51
STRINGTRIUR3_12818-P11e-154(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33473678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.13e-23bHLH family protein