PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_12645-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

bZIP

Protein Properties

Length: 449aa MW: 48412.3 Da PI: 7.1259

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_12645-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	27	9.7e-09	196	218	3	25
XXCHHHCHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKk 25 +k err+++NReAA++sR+RKk TRIUR3_12645-P1 196 HDKTERRLAQNREAAKKSRLRKK 218 589*******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	8.3E-6	195	223	No hit	No description
Pfam	PF07716	1.4E-4	196	219	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	201	216	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	9.9E-30	294	366	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 449 aa Download sequence Send to blast
MTSSVRHCLG RDFQPAAAAA AYFGELEEAL IHGAGAGVGV PDHLHHPHPG GMIAGDAQAK 60 SAAAGGGGGG GGYLAGAGRP PTLEIFPSWP MPHPQQLHSA GNSQSVGSTT DSSSARNTMA 120 QMELVSPGPA GSVRPSPSST TSEQRQRQEV MMVTTDDYSY KPGLPPPAAA GLAAAAPSFQ 180 QPHQGQQLQL HGGGDHDKTE RRLAQNREAA KKSRLRKKVL TRSIDIPLMI VPSTVAYDCL 240 NLSALFFTGL CAESGDQQGQ ASADGARAPE STVTGAAMFD MEYARWLDDD GKRLAELRGG 300 LQAHLADSNL GAVVEECMQH YDELFQLKAE LARADVFHLL TGAWATPAER CFFWMGGFRP 360 SELLKIFEKA DNLRQQTLHQ MRRILTTRQA ARCFLSIGEY YRRLRALSSL WASRPRENFI 420 GTESLSPTGT ELQGMQQHHQ PQQNQFSGF

Sequence ? help Back to Top

Protein Sequence Length: 449 aa Download sequence Send to blast

MTSSVRHCLG RDFQPAAAAA AYFGELEEAL IHGAGAGVGV PDHLHHPHPG GMIAGDAQAK  60
SAAAGGGGGG GGYLAGAGRP PTLEIFPSWP MPHPQQLHSA GNSQSVGSTT DSSSARNTMA  120
QMELVSPGPA GSVRPSPSST TSEQRQRQEV MMVTTDDYSY KPGLPPPAAA GLAAAAPSFQ  180
QPHQGQQLQL HGGGDHDKTE RRLAQNREAA KKSRLRKKVL TRSIDIPLMI VPSTVAYDCL  240
NLSALFFTGL CAESGDQQGQ ASADGARAPE STVTGAAMFD MEYARWLDDD GKRLAELRGG  300
LQAHLADSNL GAVVEECMQH YDELFQLKAE LARADVFHLL TGAWATPAER CFFWMGGFRP  360
SELLKIFEKA DNLRQQTLHQ MRRILTTRQA ARCFLSIGEY YRRLRALSSL WASRPRENFI  420
GTESLSPTGT ELQGMQQHHQ PQQNQFSGF

Functional Description ? help Back to Top
Source	Description
UniProt	Required for the formation of the blade-sheath boundary in leaves. Promotes flowering. {ECO:0000269\|PubMed:9490265}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX424322	0.0	JX424322.1 Triticum urartu basic leucine zipper protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020190193.1	1e-142	transcription factor LG2-like isoform X4
Swissprot	O49067	1e-131	LG2_MAIZE; Transcription factor LG2
TrEMBL	M7YR60	0.0	M7YR60_TRIUA; Transcription factor HBP-1b(C38)
STRING	TRIUR3_12645-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3809	31	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.2	4e-48	bZIP family protein

Publications ? help Back to Top
Walsh J,Freeling M The liguleless2 gene of maize functions during the transition from the vegetative to the reproductive shoot apex. Plant J., 1999. 19(4): p. 489-95 [PMID:10504571] Schnable PS, et al. The B73 maize genome: complexity, diversity, and dynamics. Science, 2009. 326(5956): p. 1112-5 [PMID:19965430]