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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_12325-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C2H2 | ||||||||
Protein Properties | Length: 193aa MW: 21778.6 Da PI: 6.9607 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.7 | 0.00038 | 28 | 48 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C +C++ F+++ L H++ H TRIUR3_12325-P1 28 CVYCHRKFRTSQALGGHQNAH 48 ******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.76E-5 | 25 | 53 | No hit | No description |
PROSITE profile | PS50157 | 10.887 | 26 | 53 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 28 | 48 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MEHAHDELSL ELTLAAAVVA PAPGFFLCVY CHRKFRTSQA LGGHQNAHKE ERADKRRRET 60 AAATAHASKP ERAAATVWVS EEAAAAASQT IWASRGNKLV TVAQHVSLDH TTNVHWSRIW 120 KFFTLWMFVQ NIHLDELDKD DIVWKHTNDG IYSVASTYRS QFLVFGPLPL ESHDMQELYA 180 TKGLVFCLVS YTE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | M7Z9C3 | 1e-142 | M7Z9C3_TRIUA; Zinc finger protein KNUCKLES | ||||
STRING | TRIUR3_12325-P1 | 1e-142 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP183 | 36 | 274 |