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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_12166-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C2H2 | ||||||||
Protein Properties | Length: 111aa MW: 11990.7 Da PI: 10.4883 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.9 | 0.00016 | 69 | 91 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg F L H+r+H TRIUR3_12166-P1 69 HQCHVCGLEFEMGQALGGHMRRH 91 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 6.7E-11 | 17 | 41 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.17E-7 | 17 | 91 | No hit | No description |
SMART | SM00355 | 0.51 | 17 | 39 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.182 | 17 | 39 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 19 | 39 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 3.0E-11 | 68 | 94 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.681 | 69 | 96 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.24 | 69 | 91 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 71 | 91 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 111 aa Download sequence Send to blast |
MADRTKKQRR GVAAGEFVCK TCSRAFPSFQ ALGGHRTSHL RGHNGLALGL AAGSDQPGTK 60 KTTDQKQAHQ CHVCGLEFEM GQALGGHMRR HREQEAATTA QAPPVLLQLF V |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat stress. {ECO:0000269|PubMed:18201973}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU253554 | 1e-123 | EU253554.1 Triticum aestivum C2H2 zinc finger protein (ZFP2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020198422.1 | 5e-66 | zinc finger protein ZAT8-like | ||||
Refseq | XP_020199617.1 | 5e-66 | zinc finger protein ZAT8-like | ||||
Swissprot | Q9LX85 | 5e-20 | ZAT8_ARATH; Zinc finger protein ZAT8 | ||||
TrEMBL | A0A3B6KSK7 | 4e-75 | A0A3B6KSK7_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446TLC3 | 4e-75 | A0A446TLC3_TRITD; Uncharacterized protein | ||||
STRING | TRIUR3_12166-P1 | 9e-76 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1305 | 30 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46090.1 | 5e-22 | C2H2 family protein |