PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_12102-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 350aa    MW: 39959.4 Da    PI: 8.2865
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_12102-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.91.4e-16159253299
                      EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
               B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                      +  ++++ +++s ++ +pk+f+ e+        +   +l de   ++ + ++   ++k ++y+l kGW++F+ +++L +gD +vF++++r +f 
  TRIUR3_12102-P1 159 VRPMSHECATRSILMQIPKHFI-EYlpA----HDEAAVLVDEADDEFHMMYNAhrKGKHCHYYLDKGWRRFAADHDLADGDCLVFHMTERVKF- 246
                      556667777888899*******.66332....44579**************7744555555*************************8776666. PP

                      .EEEEE-S CS
               B3  92 lvvkvfrk 99 
                       +v +fr+
  TRIUR3_12102-P1 247 -KVYIFRA 253
                      .9999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-16154254IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.33E-16155254IPR015300DNA-binding pseudobarrel domain
CDDcd100176.10E-20156252No hitNo description
PROSITE profilePS5086311.885158254IPR003340B3 DNA binding domain
SMARTSM010194.1E-7158254IPR003340B3 DNA binding domain
PfamPF023623.8E-14163253IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MAESNSYEEQ RRRQIEENRR KLEELRLHHL SAAVREAAAR PKPNPKPRPV RQILSLLLPC  60
LRSVFRFLFA RARIYHWSAR PVSQKRKAPE PGDLRRSGRV AGLPEQPNYL EGALQRDYRG  120
VYEAYAASKT PTAEERAGAV AKAEELKRRI HRIRCPAFVR PMSHECATRS ILMQIPKHFI  180
EYLPAHDEAA VLVDEADDEF HMMYNAHRKG KHCHYYLDKG WRRFAADHDL ADGDCLVFHM  240
TERVKFKVYI FRANPDYESD QTSDDSDDEE RSTLSADVGI GYRDFVLVAC RVAISDPAIV  300
ADLHYNIGLI GVAEILQGKV SWWLGSNRLE LAESGIPTAM GLAEAHRSGC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020148834.11e-125B3 domain-containing protein Os06g0194400-like
TrEMBLT1M3Q80.0T1M3Q8_TRIUA; Uncharacterized protein
STRINGTRIUR3_12102-P10.0(Triticum urartu)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.11e-12B3 family protein