PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_12005-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 403aa    MW: 45507.6 Da    PI: 10.0912
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_12005-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B363.24e-201061861298
                      HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                       + r+++p kfa+++ g+   ++t++l +++g + +v++  +k+  + vl +GWk F+ a++L++gDf+vFk+dg+se   +v +f 
  TRIUR3_12005-P1 106 FHERMIIPDKFAQHFRGQ--IGRTIKLASRHGYTSDVQI--TKNLAKLVLDSGWKAFACAHNLRTGDFLVFKYDGNSEL--KVLIFG 186
                      4568********888878..6789***************..********************************997766..887775 PP
2B351.51.8e-16314401899
                      -HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3   8 sdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      s ++k++ l +++k+ae +   +  e +++t  + +g++Wev++++++k+++  l +GW +Fv+ n+L+ gD+++F+l ++++  ++v+++ k
  TRIUR3_12005-P1 314 SIYGKTRTLEISRKYAEVYlPFV--E-QMVT-LQHHGKKWEVRCCVKNKKSKR-LMRGWMHFVRGNNLQLGDVCLFELLRNKKYVMNVHIIHK 401
                      5567888899******9886333..2.2455.556*********985555443.567**********************99999999999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.8E-2394190IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.24E-2295190IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.12695188IPR003340B3 DNA binding domain
SMARTSM010195.9E-1598188IPR003340B3 DNA binding domain
PfamPF023621.6E-1798185IPR003340B3 DNA binding domain
CDDcd100175.34E-2298185No hitNo description
Gene3DG3DSA:2.40.330.107.8E-22300401IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.22E-21301400IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.731307402IPR003340B3 DNA binding domain
CDDcd100171.28E-17309399No hitNo description
SMARTSM010191.6E-10310402IPR003340B3 DNA binding domain
PfamPF023628.9E-15313401IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0010048Biological Processvernalization response
GO:0005654Cellular Componentnucleoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MPLGPAVVDV SDATPHLLHE HHLLPLVPSP PPAFPLYSQP SPKAPDNTPG RSRHEAPLPP  60
NPKRIVGFHP EMSKPWMKQK ELDEHRYWNH TGEQDKNFFK VMIGDFHERM IIPDKFAQHF  120
RGQIGRTIKL ASRHGYTSDV QITKNLAKLV LDSGWKAFAC AHNLRTGDFL VFKYDGNSEL  180
KVLIFGPSGC EKIPACNLMK NAAPGKEWWG NTAGIVNTCH NLPMKLPHSG RQIRPSKDSS  240
RQGNDIINVS SSSSPSESAG GVSSSEDDHS LSGCILAKGT LLNLNHLQKK QLEEKIRAMN  300
SEIPIYGCVI RKSSIYGKTR TLEISRKYAE VYLPFVEQMV TLQHHGKKWE VRCCVKNKKS  360
KRLMRGWMHF VRGNNLQLGD VCLFELLRNK KYVMNVHIIH KSL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020162967.10.0putative B3 domain-containing protein Os03g0621600
SwissprotQ851V51e-104Y3216_ORYSJ; Putative B3 domain-containing protein Os03g0621600
TrEMBLT1M3G40.0T1M3G4_TRIUA; Uncharacterized protein
STRINGTRIUR3_12005-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29012985
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.17e-16B3 family protein