PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_11899-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C2H2 | ||||||||
Protein Properties | Length: 170aa MW: 18484.1 Da PI: 8.6337 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.9 | 0.00034 | 40 | 62 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+++F++ L H +H TRIUR3_11899-P1 40 FVCKTCDRVFPSFQALGGHRASH 62 89**********99999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.91E-8 | 38 | 100 | No hit | No description |
Pfam | PF13912 | 1.4E-12 | 39 | 64 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.39 | 40 | 67 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.12 | 40 | 62 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 42 | 62 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 2.9 | 78 | 100 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 1.2E-8 | 78 | 102 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 80 | 100 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MMKRFEFERE MARVLLHVSR EQPIPKPAAG RGDNTPERAF VCKTCDRVFP SFQALGGHRA 60 SHKKPRLDGD GDLKPKMHGC SVCGLEFAVG QALGGHMRRH RAMLAGGRGV ATSPPATTIN 120 KPVVGSKRVL WLDLNHPPCD DGGSIEADHS ECGHDTATAG YTFHQFLDTG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. | |||||
UniProt | Transcriptional repressor involved in light acclimation, cold and oxidative stress responses. May regulate a collection of transcripts involved in response to high-light, cold and oxidative stress. {ECO:0000269|PubMed:11069694, ECO:0000269|PubMed:14722088, ECO:0000269|PubMed:15634197, ECO:0000269|PubMed:16183833}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By H(2)O(2), cold, drought, cold or heat stresses, wounding, cucumber mosaic virus (CMV), exposure to high-intensity light and low-oxygen conditions in roots. {ECO:0000269|PubMed:12368499, ECO:0000269|PubMed:14722088, ECO:0000269|PubMed:15634197, ECO:0000269|PubMed:16183833, ECO:0000269|PubMed:18201973, ECO:0000269|PubMed:18922600}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ151538 | 6e-86 | DQ151538.1 Hordeum vulgare subsp. vulgare cultivar Dicktoo ZFP16-1 (ZFP16-1) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020201498.1 | 9e-90 | zinc finger protein ZAT12-like | ||||
Swissprot | Q42410 | 2e-24 | ZAT12_ARATH; Zinc finger protein ZAT12 | ||||
Swissprot | Q9SLD4 | 3e-24 | ZAT11_ARATH; Zinc finger protein ZAT11 | ||||
TrEMBL | T1M365 | 1e-123 | T1M365_TRIUA; Uncharacterized protein | ||||
STRING | TRIUR3_11899-P1 | 1e-123 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP501 | 37 | 157 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28710.1 | 1e-27 | C2H2 family protein |