PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

HD-ZIP

Protein Properties

Length: 289aa MW: 31545.3 Da PI: 5.094

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_11780-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.7	2.3e-19	27	79	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + +f++eq++ Le++F+ + ++ +++ +LA++lgL+ rqV +WFqN+Ra++k TRIUR3_11780-P1 27 KKRFSEEQIKSLESMFATQTKLEPRQKLQLARELGLQPRQVAIWFQNKRARWK 79 456*************************************************9 PP
2	HD-ZIP_I/II	122.5	2e-39	26	115	2	91
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +k+r+s+eq+k+LE++F +++kLep++K +lareLglqprqva+WFqn+RAR+k+kqlE++y+aL++ ydal ++ ++L+k++++L +++ TRIUR3_11780-P1 26 RKKRFSEEQIKSLESMFATQTKLEPRQKLQLARELGLQPRQVAIWFQNKRARWKSKQLERQYAALRDDYDALLSSYDQLKKDKQALLNQV 115 8*************************************************************************************9886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.0E-19	17	81	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.876	21	81	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.31E-18	21	83	IPR009057	Homeodomain-like
SMART	SM00389	3.6E-16	24	85	IPR001356	Homeobox domain
CDD	cd00086	1.08E-17	26	82	No hit	No description
Pfam	PF00046	1.0E-16	27	79	IPR001356	Homeobox domain
PRINTS	PR00031	1.0E-5	52	61	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	56	79	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.0E-5	61	77	IPR000047	Helix-turn-helix motif
Pfam	PF02183	3.2E-11	81	115	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0009738	Biological Process	abscisic acid-activated signaling pathway
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MEQGEEDGDW MVEPAAGKKG GAMIDRKKRF SEEQIKSLES MFATQTKLEP RQKLQLAREL 60 GLQPRQVAIW FQNKRARWKS KQLERQYAAL RDDYDALLSS YDQLKKDKQA LLNQVCLYST 120 TYQVLVSPCS PAGGGVRRVL VVPVANARST GSVQLEKLAE MLREPGGAKC GDNAGAAARD 180 DVRLAVAGMS MKDEFVDAGG ASKLYSASEG CGGSGKLSLF GEEDDDAGLF LRPSLQLPTA 240 HDGGFTASGP AEYQQQSPSS FPFHSSWPSS AAEQTCSSSQ WWEFESPSE

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269\|PubMed:10732669}.
UniProt	Probable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269\|PubMed:10732669}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00650	PBM	Transfer from LOC_Os09g35910	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT224374	0.0	KT224374.1 Triticum aestivum cultivar RAC875 HDZipI-3 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020148448.1	1e-162	homeobox-leucine zipper protein HOX6-like
Swissprot	Q651Z5	7e-86	HOX6_ORYSJ; Homeobox-leucine zipper protein HOX6
Swissprot	Q9XH35	7e-86	HOX6_ORYSI; Homeobox-leucine zipper protein HOX6
TrEMBL	M7YI40	0.0	M7YI40_TRIUA; Homeobox-leucine zipper protein HOX6
STRING	TRIUR3_11780-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7873	34	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46680.1	5e-40	homeobox 7

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]