PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_11780-P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HD-ZIP
Protein Properties Length: 289aa    MW: 31545.3 Da    PI: 5.094
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_11780-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.72.3e-192779456
                     -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                     + +f++eq++ Le++F+ + ++  +++ +LA++lgL+ rqV +WFqN+Ra++k
  TRIUR3_11780-P1 27 KKRFSEEQIKSLESMFATQTKLEPRQKLQLARELGLQPRQVAIWFQNKRARWK 79
                     456*************************************************9 PP

2HD-ZIP_I/II122.52e-3926115291
      HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                      +k+r+s+eq+k+LE++F +++kLep++K +lareLglqprqva+WFqn+RAR+k+kqlE++y+aL++ ydal ++ ++L+k++++L +++
  TRIUR3_11780-P1  26 RKKRFSEEQIKSLESMFATQTKLEPRQKLQLARELGLQPRQVAIWFQNKRARWKSKQLERQYAALRDDYDALLSSYDQLKKDKQALLNQV 115
                      8*************************************************************************************9886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.0E-191781IPR009057Homeodomain-like
PROSITE profilePS5007116.8762181IPR001356Homeobox domain
SuperFamilySSF466892.31E-182183IPR009057Homeodomain-like
SMARTSM003893.6E-162485IPR001356Homeobox domain
CDDcd000861.08E-172682No hitNo description
PfamPF000461.0E-162779IPR001356Homeobox domain
PRINTSPR000311.0E-55261IPR000047Helix-turn-helix motif
PROSITE patternPS0002705679IPR017970Homeobox, conserved site
PRINTSPR000311.0E-56177IPR000047Helix-turn-helix motif
PfamPF021833.2E-1181115IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MEQGEEDGDW MVEPAAGKKG GAMIDRKKRF SEEQIKSLES MFATQTKLEP RQKLQLAREL  60
GLQPRQVAIW FQNKRARWKS KQLERQYAAL RDDYDALLSS YDQLKKDKQA LLNQVCLYST  120
TYQVLVSPCS PAGGGVRRVL VVPVANARST GSVQLEKLAE MLREPGGAKC GDNAGAAARD  180
DVRLAVAGMS MKDEFVDAGG ASKLYSASEG CGGSGKLSLF GEEDDDAGLF LRPSLQLPTA  240
HDGGFTASGP AEYQQQSPSS FPFHSSWPSS AAEQTCSSSQ WWEFESPSE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00650PBMTransfer from LOC_Os09g35910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT2243740.0KT224374.1 Triticum aestivum cultivar RAC875 HDZipI-3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020148448.11e-162homeobox-leucine zipper protein HOX6-like
SwissprotQ651Z57e-86HOX6_ORYSJ; Homeobox-leucine zipper protein HOX6
SwissprotQ9XH357e-86HOX6_ORYSI; Homeobox-leucine zipper protein HOX6
TrEMBLM7YI400.0M7YI40_TRIUA; Homeobox-leucine zipper protein HOX6
STRINGTRIUR3_11780-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78733448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.15e-40homeobox 7
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]