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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
TRIUR3_11677-P1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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| Family |
BBR-BPC |
| Protein Properties |
Length: 385aa MW: 42563 Da PI: 9.3744 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| TRIUR3_11677-P1 | genome | BGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 369 | 8.5e-113 | 1 | 328 | 1 | 298 |
GAGA_bind 1 mdddgsre..rnkg.yye........paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnklla 83
md+ g+re r+++ y+ p++++k++ +++l+++++erd++i er++al+ekkaa+aerdmaf+qrd+a+aern+a+verdn+l+a
TRIUR3_11677-P1 1 MDNLGHREngRQRPdPYKalhtqwmmPQRQMKDHHSMNLLALLSERDTAIMERDHALAEKKAAMAERDMAFAQRDSAMAERNAAIVERDNALAA 94
99999998899999888899999999889***************************************************************** PP
GAGA_bind 84 lllvensla...salpvgvqvlsgtksidslqqlse.....pqledsave.lreeeklealpieeaaee.akekkkkkkrqrakkpkekkak.. 165
l+l++++ s ++++ ++l+g+k+ ++++q+ + ql+ds+++ +re+++++a+pi++a+ + a ++kk+kk++++++p+++ +
TRIUR3_11677-P1 95 LELARTNGFnmnSGNGFNPGSLNGAKNFHHHDQQPHaqsspLQLADSPYDhAREMHISDAYPISTAPVTaAGKAKKPKKNSSQASPLKRPSGvl 188
*9998875545588889999***********99877789999********9*************9976516789999***********999988 PP
GAGA_bind 166 kkkkksekskkkvkkesader.......skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrg 252
+k+kk ++++ ++++ e+ +k+e+k++dl+ln+vs+Des++P+P+CsCtG+lrqCYkWGnGGWqS+CCt+++S+yPLPv++++r+
TRIUR3_11677-P1 189 RKTKKAGGDWRDAGMSGVGEDparaaseMKNEWKDQDLGLNQVSFDESSMPAPACSCTGVLRQCYKWGNGGWQSSCCTMSMSMYPLPVMPNKRH 282
7777788899999998877556788888****************************************************************** PP
GAGA_bind 253 aRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfv 298
aR++grKmS++af+klL++LaaeG+dls vDLkdhWAkHGtn+ v
TRIUR3_11677-P1 283 ARMGGRKMSGSAFTKLLSRLAAEGHDLSASVDLKDHWAKHGTNRIV 328
*******************************************987 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0005730 | Cellular Component | nucleolus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 385 aa
Download sequence Send
to blast |
MDNLGHRENG RQRPDPYKAL HTQWMMPQRQ MKDHHSMNLL ALLSERDTAI MERDHALAEK 60
KAAMAERDMA FAQRDSAMAE RNAAIVERDN ALAALELART NGFNMNSGNG FNPGSLNGAK 120
NFHHHDQQPH AQSSPLQLAD SPYDHAREMH ISDAYPISTA PVTAAGKAKK PKKNSSQASP 180
LKRPSGVLRK TKKAGGDWRD AGMSGVGEDP ARAASEMKNE WKDQDLGLNQ VSFDESSMPA 240
PACSCTGVLR QCYKWGNGGW QSSCCTMSMS MYPLPVMPNK RHARMGGRKM SGSAFTKLLS 300
RLAAEGHDLS ASVDLKDHWA KHGTNRIVDE IERSKNNSSS IASGCTNEHL SLGVETSHQP 360
LLLTDGKKWR WQNNARLLNV YLELL
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK374560 | 0.0 | AK374560.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3069B24. |
| GenBank | AK374870 | 0.0 | AK374870.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3078K14. |
