![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | TRIUR3_11045-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 573aa MW: 65275.6 Da PI: 7.7852 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 330.2 | 3.9e-101 | 206 | 570 | 9 | 373 |
GRAS 9 AeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaI 102 A av+++d++ a +lL+r++ ++sp+gd++qRla+yf+e+L+arla+ +s+ly++l ++ t+ ++e+l+a+klf ++ ++k+++l N++I TRIUR3_11045-P1 206 AGAVATNDQRSACELLWRVKRHSSPTGDATQRLAHYFAEGLEARLAGRGSQLYRSLMVKCTP---VVEVLKAYKLFMSACCFMKVCFLFSNKTI 296 889**********************************************************9...***************************** PP GRAS 103 leavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194 ++av g +++Hi+ ++++ G+QWp Ll+ La+R++gpp++RiT + s +g +e++ tg+rL + A+++gvpf+f+v + + ed+++e+L TRIUR3_11045-P1 297 YNAVMGRHKLHIVHYGVNDGFQWPDLLRWLAEREGGPPKVRITSITSLWPGfrPAEQTYDTGQRLYRCAKQFGVPFKFRV-IPAKAEDVRVEDL 389 ***********************************************999899**************************9.7999********* PP GRAS 195 rvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286 +++p+E+l+Vn+ ++ +l+desv ++ +rd vL+++++++P v+v++ +a++n++ F++rf + l+ ++a fd++ea++pr+++er vE TRIUR3_11045-P1 390 DINPDEVLVVNSLIHFRSLMDESVVIDRlnPRDMVLNTIRKMKPAVFVHAIVNASYNTTFFVTRFRQVLHNFAAHFDMMEATVPRDNDERLLVE 483 ************************9998889*************************************************************** PP GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 r +++r ++n++aceg++r+er +++++W++r ++aG+++++l+ ++++ k +++k + + + ++e++++l++gWk+r L+++S W TRIUR3_11045-P1 484 RDIIARCAMNIIACEGTDRVERPQNYREWQARNQRAGLRQLALDPDIVQFLKDIVKKQYHKHFVINEDHQWLLQGWKGRVLYAISTW 570 ***********************************************************999************************* PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 55.369 | 172 | 551 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.3E-98 | 206 | 570 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 573 aa Download sequence Send to blast |
NLQPAPALQQ PHDDLALDYI SRMLMEEDIV DKFIYQYPDP AALLQAQHPF AQILTTSDTT 60 TSSDMLTSAL PIRHIQNPAF FLNDNGVADP NNSMDMISSM AFFRGMEEAN RFLPRYSGAV 120 EGSNMPHGGG GNGAEAGRSS KQMAVQVHPE SKEESDMLDQ FMLNSYDMCT TEARERCDEA 180 EQQPISTKAP RGRRGARLAP LRIRGAGAVA TNDQRSACEL LWRVKRHSSP TGDATQRLAH 240 YFAEGLEARL AGRGSQLYRS LMVKCTPVVE VLKAYKLFMS ACCFMKVCFL FSNKTIYNAV 300 MGRHKLHIVH YGVNDGFQWP DLLRWLAERE GGPPKVRITS ITSLWPGFRP AEQTYDTGQR 360 LYRCAKQFGV PFKFRVIPAK AEDVRVEDLD INPDEVLVVN SLIHFRSLMD ESVVIDRLNP 420 RDMVLNTIRK MKPAVFVHAI VNASYNTTFF VTRFRQVLHN FAAHFDMMEA TVPRDNDERL 480 LVERDIIARC AMNIIACEGT DRVERPQNYR EWQARNQRAG LRQLALDPDI VQFLKDIVKK 540 QYHKHFVINE DHQWLLQGWK GRVLYAISTW VSD |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 1e-39 | 208 | 570 | 14 | 374 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020172178.1 | 0.0 | scarecrow-like protein 33 | ||||
TrEMBL | T1M0V7 | 0.0 | T1M0V7_TRIUA; Uncharacterized protein | ||||
STRING | TRIUR3_11045-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP231 | 31 | 297 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G29060.1 | 1e-125 | GRAS family protein |