PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_11025-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

HSF

Protein Properties

Length: 432aa MW: 47409.4 Da PI: 4.972

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_11025-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	94.4	1.2e-29	1	85	9	101
HHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 9 iledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkk 101 +++d++++ ++sws ++ +sfvv+++ efa ++Lp yFkhsnf+SF+RQLn+YgF+k++ e+ weF +++F kg+k+ll++i r+k TRIUR3_11025-P1 1 MVDDPATDAVVSWSdASDTSFVVWNSPEFAARLLPAYFKHSNFSSFIRQLNTYGFRKIDPER---------WEFGNEYFVKGQKHLLKNIYRRK 85 899*********76679************************************999.........*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00447	4.8E-26	1	84	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SMART	SM00415	4.4E-45	1	84	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	2.8E-30	1	84	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	5.44E-28	1	84	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	2.9E-9	33	45	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	34	58	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.9E-9	46	58	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 432 aa Download sequence Send to blast
MVDDPATDAV VSWSDASDTS FVVWNSPEFA ARLLPAYFKH SNFSSFIRQL NTYGFRKIDP 60 ERWEFGNEYF VKGQKHLLKN IYRRKPIHSH SHQPGALPDN ERSFFEDEID RLAREKANLQ 120 AELWKSKQQE SGTMFQIEAL ERRAVDMEQR QGKMIAFLQQ ASKNPHFVSK LVKMAEASSM 180 FADALHKKRR LSGLDYAVEA TETASFCDDH SATSRQEMGN LLNQHFSDKL KLGLCSAAAE 240 SNLVTLSTQS SHEDNGSPHG RHPPVHDGMG TGCLPLVPQI MELSDTGTSI CPSKSSFFAP 300 AVNDEGLSPC HLSLTLASCS MDVDRGQASN ADGSTTIDEG SDNPPEATAA AMGGNPKASV 360 DAGTAEAPTP REDTRVAAEP AAPVKANDNF WEQFLTERPG DASSGPRDPS MDKEQTEGGG 420 KDDREDTEQL KL

Sequence ? help Back to Top

Protein Sequence Length: 432 aa Download sequence Send to blast

MVDDPATDAV VSWSDASDTS FVVWNSPEFA ARLLPAYFKH SNFSSFIRQL NTYGFRKIDP  60
ERWEFGNEYF VKGQKHLLKN IYRRKPIHSH SHQPGALPDN ERSFFEDEID RLAREKANLQ  120
AELWKSKQQE SGTMFQIEAL ERRAVDMEQR QGKMIAFLQQ ASKNPHFVSK LVKMAEASSM  180
FADALHKKRR LSGLDYAVEA TETASFCDDH SATSRQEMGN LLNQHFSDKL KLGLCSAAAE  240
SNLVTLSTQS SHEDNGSPHG RHPPVHDGMG TGCLPLVPQI MELSDTGTSI CPSKSSFFAP  300
AVNDEGLSPC HLSLTLASCS MDVDRGQASN ADGSTTIDEG SDNPPEATAA AMGGNPKASV  360
DAGTAEAPTP REDTRVAAEP AAPVKANDNF WEQFLTERPG DASSGPRDPS MDKEQTEGGG  420
KDDREDTEQL KL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	4e-19	1	84	36	129	Heat shock factor protein 1
5d5v_B	4e-19	1	84	36	129	Heat shock factor protein 1
5d5v_D	4e-19	1	84	36	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK355564	0.0	AK355564.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1022K17.
GenBank	AK357504	0.0	AK357504.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1055A05.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020200706.1	0.0	heat stress transcription factor A-5
Swissprot	Q6K6S5	0.0	HSFA5_ORYSJ; Heat stress transcription factor A-5
TrEMBL	M8AVI3	0.0	M8AVI3_TRIUA; Heat stress transcription factor A-5
STRING	TRIUR3_11025-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9000	32	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13980.1	1e-100	HSF family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]