PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_10947-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | B3 | ||||||||
Protein Properties | Length: 230aa MW: 26325 Da PI: 7.7881 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 50.2 | 4.7e-16 | 142 | 222 | 11 | 99 |
HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 ++ l +p +f eh +++ ++l de+ ++++v + r +s++ l +GW+eF+ +n+L egD +vF+l++r f +v +fr+ TRIUR3_10947-P1 142 QSLTSLHIPAQFSMEHLP--DNGMRMVLVDEEEEEFKVSY--RPHSSS--LVAGWSEFAIDNELVEGDCLVFQLIKRALF--KVYIFRA 222 4445589*****999953..36899***************..999988..889**********************98888..9999997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 7.26E-21 | 129 | 223 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.5E-20 | 130 | 223 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.603 | 132 | 223 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.22E-21 | 134 | 221 | No hit | No description |
SMART | SM01019 | 1.1E-15 | 136 | 223 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.6E-13 | 140 | 222 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MAEANSYEEQ RRRQVEENKR KLEELRLHHL PAAVRGAAVK PRLARQIRAT LLAVPLLLLV 60 WLVSQKRKAP KPRGAADDAP PRRSGRIATL PEQPDYRDNL GTGKPRQQKE VKPDHAYAIA 120 KAEELQDELG SDYPTFVKPM PQSLTSLHIP AQFSMEHLPD NGMRMVLVDE EEEEFKVSYR 180 PHSSSLVAGW SEFAIDNELV EGDCLVFQLI KRALFKVYIF RASSYYENEH |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK374346 | 0.0 | AK374346.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3061L19. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020158478.1 | 1e-137 | B3 domain-containing protein Os06g0194400-like | ||||
Swissprot | Q69V36 | 1e-67 | Y6944_ORYSJ; B3 domain-containing protein Os06g0194400 | ||||
TrEMBL | T1M0L3 | 1e-168 | T1M0L3_TRIUA; Uncharacterized protein | ||||
STRING | TRIUR3_10947-P1 | 1e-169 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1756 | 38 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 3e-28 | B3 family protein |
Publications ? help Back to Top | |||
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