PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_10620-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family M-type_MADS
Protein Properties Length: 370aa    MW: 40934.7 Da    PI: 4.8657
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_10620-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF42.77e-141056349
                     --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     i+n+  r  tf kRr g++K A+ +S L+ a+vav++  ++ k++ +
  TRIUR3_10620-P1 10 IQNDKDRDLTFYKRRSGLFKRASDISALTRARVAVVLETKNEKMHSF 56
                     99*******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.2E-7159IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.568160IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-8222IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.05E-14469IPR002100Transcription factor, MADS-box
PfamPF003192.4E-151056IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-82237IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-83758IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
KERRSGVAYI QNDKDRDLTF YKRRSGLFKR ASDISALTRA RVAVVLETKN EKMHSFGTPL  60
ADPIVDAFLF GAPPAVPSTN EATTTRIGSL QNEVAQLDME NMTEEDRNKL SILRMKSIQE  120
ENPSMVANLI FTKEQDLGLE ALNKLFSELS WVQKDIRCRL PPLHGREAKT SGTCVAQDLQ  180
VPSVLPTDHL GTPHPLMQPS WPHNLSQLQP PADPLPSQPE QTSVPLFPMQ VPQMFDFAPP  240
SLAPHLASHV QTIPNQVHEQ TQPQELHVQN YESPCNIVQP QQSDANHDST LGHNLEASPL  300
FGYSSGNAFS IDDPFNTKQW GHALSDQSFY NNFLGMDDYL GSSGTDLGQS SMVNGGWVDV  360
PPSSTGQDID
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020174736.10.0MADS-box transcription factor 8-like
TrEMBLT1LZQ40.0T1LZQ4_TRIUA; Uncharacterized protein
STRINGTRIUR3_10620-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30892276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-11AGAMOUS-like 62