PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_10309-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 341aa    MW: 37644.4 Da    PI: 9.9299
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_10309-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.67.2e-11161222454
                      HHHHHHHHHHHHHHHHHHHHHCTSCC.C.............TTS-STCHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPk.as..........kapskKlsKaeiLekAveYIksL 54 
                      ++  rE+ RRd++N++f eL +++ +              +++ Kl+Ka+iL  A++ + +L
  TRIUR3_10309-P1 161 SKACREKMRRDKLNDRFLELCSVMNSgKHsgleecsasnPGKNAKLDKASILSDATRMLTQL 222
                      6789**********************6559***************************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.88E-11151237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.49157222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.08E-6160227No hitNo description
PfamPF000102.8E-8161222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.2E-12162244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-7163228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MAPKRSFLTA AVAVLLYAPI GSALSSLPCR MHAVESSRWS SGPVGSVCKV NITDAAPIPA  60
PMVLYRYKYP VVQKTWNIRR NPKQDYFVCG GQENNLRGAT YQNCMKIIDQ NLKMIYRLSL  120
SEVLIRIRLG IEDVSGGDSG LGHSNLGKRA RDEPSSSGPK SKACREKMRR DKLNDRFLEL  180
CSVMNSGKHS GLEECSASNP GKNAKLDKAS ILSDATRMLT QLRGETEKLK ESNSNLRETI  240
KDLKVEKNEL RDEKLSLKAE KERLEQQLKA ASAAPTGFAP HMPYPAAFHP AVYPPFAPPY  300
QVPANKGAPI PAAFPGMAMW HWLPPTAMDT TQDPKLWPPN A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3691720.0AK369172.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2086D01.
GenBankAK3702300.0AK370230.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2107F07.
GenBankAK3735130.0AK373513.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3033I05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020158150.11e-140transcription factor ILR3-like
TrEMBLM8AFF10.0M8AFF1_TRIUA; Transcription factor ILR3
STRINGTRIUR3_10309-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81733646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.14e-54bHLH family protein