PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_09121-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | B3 | ||||||||
Protein Properties | Length: 107aa MW: 12543.3 Da PI: 8.7544 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 57.6 | 2.3e-18 | 26 | 106 | 5 | 89 |
-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 5 ltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 +t+ d ++s+ +v+p +f+ ++ g k s t+ le ++g++++v + + +++++vl++GW+ Fv+an++ e+D+++F++ g+ + TRIUR3_09121-P1 26 FTHMDRNSSHSMVIPESFV-NYfGWK--LSGTIELEAPNGNVYDVGI--TERRNKTVLRSGWEAFVDANHIVERDSLMFRYRGNCR 106 466799999**********.552544..667****************..999999*************************998755 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.32E-19 | 19 | 107 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 9.4E-19 | 21 | 106 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.407 | 22 | 107 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.39E-16 | 23 | 107 | No hit | No description |
SMART | SM01019 | 1.1E-6 | 26 | 107 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.8E-17 | 26 | 106 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 107 aa Download sequence Send to blast |
GGEMRKSCEC CKRYWTHLHG KVKCFFTHMD RNSSHSMVIP ESFVNYFGWK LSGTIELEAP 60 NGNVYDVGIT ERRNKTVLRS GWEAFVDANH IVERDSLMFR YRGNCRF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020158256.1 | 5e-70 | B3 domain-containing protein Os03g0619600-like | ||||
Swissprot | Q10GP0 | 3e-39 | Y3198_ORYSJ; Putative B3 domain-containing protein Os03g0619850 | ||||
TrEMBL | T1LVR1 | 3e-75 | T1LVR1_TRIUA; Uncharacterized protein | ||||
STRING | TRIUR3_09121-P1 | 6e-76 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP585 | 31 | 172 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 2e-13 | B3 family protein |