PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_09120-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 525aa    MW: 59515.4 Da    PI: 7.9795
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_09120-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.74.3e-1828115699
                      ..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3   6 tpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      t+ d ++++ +v+p +f+ ++   k   s t++le ++g++++v +  + +++++vl++GW+ Fv+an++ e D+++F++ g+ +f  +v vf+
  TRIUR3_09120-P1  28 TRMDRHSRHSMVIPERFV-NYfAWK--LSGTIKLEAPNGNVYDVGI--TERRNKTVLRSGWEAFVDANHIVESDSLMFRYRGNCRF--KVVVFD 114
                      56689999**********.563433..5669***************..999999**************************999999..777777 PP

                      S CS
               B3  99 k 99 
                      +
  TRIUR3_09120-P1 115 S 115
                      5 PP
2B3314.6e-102583411699
                      EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-..SS.SEE..EEEEE-S CS
               B3  16 lvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld..gr.sefelvvkvfrk 99 
                       v+pk++a +h     +++t++l+  e++++W  +++++  +g++ l +   +Fv++n+L egD +vF+ +  ++ ++f+  v++frk
  TRIUR3_09120-P1 258 QVVPKDYALAHFPR--KNQTIKLQLpEQSKKWYCEFRVKSDGGHCSLYD--CGFVRDNHLLEGDLCVFQPMpnRKgRTFKVIVHLFRK 341
                      489********744..5557888886788****9997777777788885..69****************5532445677777777775 PP
3B336.67.9e-124585153289
                      --SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS
               B3  32 esktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.se 89 
                      +++ l+l+   ++++W  k+  r k+g+  +++GW +F+++ngL+e+D+++F+l+++  e
  TRIUR3_09120-P1 458 GGRNLVLQLeGKSQRWHGKM--RDKKGALRISGGWTSFASENGLRERDICLFELMKNkGE 515
                      334455544246699*****..********************************986333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.63E-2121118IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.52123116IPR003340B3 DNA binding domain
CDDcd100173.47E-1924114No hitNo description
SMARTSM010191.7E-927116IPR003340B3 DNA binding domain
PfamPF023622.5E-1628114IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-1929118IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.8E-10233336IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.28E-11234336IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508636.922243342IPR003340B3 DNA binding domain
SMARTSM010190.06245342IPR003340B3 DNA binding domain
PfamPF023622.3E-8258341IPR003340B3 DNA binding domain
CDDcd100179.65E-10259340No hitNo description
SuperFamilySSF1019363.34E-14425513IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.8E-15425519IPR015300DNA-binding pseudobarrel domain
CDDcd100175.79E-12429517No hitNo description
PROSITE profilePS5086310.602429525IPR003340B3 DNA binding domain
SMARTSM010190.014431520IPR003340B3 DNA binding domain
PfamPF023626.0E-9448516IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
IDGDMRNSCE CCKRYWTHLH GKVKRFITRM DRHSRHSMVI PERFVNYFAW KLSGTIKLEA  60
PNGNVYDVGI TERRNKTVLR SGWEAFVDAN HIVESDSLMF RYRGNCRFKV VVFDSSGCEK  120
VFSCAGMLTN ISDQEPSTNS TDISTSFSDG NTHSSARRQS DDCQSGSSGH RRKRAKKDAI  180
SSPSEDSSGE DSPYEHESSE SDGQTLPTPL YVLSGKCYLT EEDDANIVEL VQEIQPEMPL  240
LVAMMRKPIS HSAPFSDQVV PKDYALAHFP RKNQTIKLQL PEQSKKWYCE FRVKSDGGHC  300
SLYDCGFVRD NHLLEGDLCV FQPMPNRKGR TFKVIVHLFR KATIDHPSSE NISKRGLPST  360
KNAPTLCIKE EPNDDEETFS SGHDEHRISK KYLDHDGTEP YMMAMGAELT EVQNKIVLEK  420
VGAIASDLPI YVAVMTKTSV HVSLTFGTEY TARYLRTGGR NLVLQLEGKS QRWHGKMRDK  480
KGALRISGGW TSFASENGLR ERDICLFELM KNKGELKQKM MVYIL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1170177RRKRAKKD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020152556.10.0B3 domain-containing protein Os03g0619600-like
TrEMBLT1LVR00.0T1LVR0_TRIUA; Uncharacterized protein
STRINGTRIUR3_09120-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-15B3 family protein