PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_08676-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

HSF

Protein Properties

Length: 533aa MW: 59898.4 Da PI: 4.8448

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_08676-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	82.9	4.7e-26	1	142	9	103
HHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT............................ CS HSF_DNA-bind 9 iledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks............................ 74 +++d++++ ++sw +nsf+v+++ efa+++LpkyFkh+nf+SFvRQLn+Y+ + + ++s TRIUR3_08676-P1 1 MVDDPATDAVVSWGPANNSFIVWNTPEFARDLLPKYFKHNNFSSFVRQLNTYQVTCCLLPAYARTSflhilaiywteaylslvkyascaanryv 94 899*********999***********************************99999887779*********************** PP ...................XTTSEEEEESXXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 75 ...................kekiweFkhksFkkgkkellekikrkkse 103 +++ weF+++ F +g+k+ll++i+r+k + TRIUR3_08676-P1 95 llenqynpfvaskegfrkvDPDKWEFANEGFLRGQKHLLKTINRRKPS 142 9999999988777665449************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	1.2E-29	1	60	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	1.54E-23	1	60	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	5.3E-23	1	139	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SMART	SM00415	2.0E-32	1	139	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	4.9E-5	32	44	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	4.9E-5	45	57	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	1.2E-29	107	139	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	1.54E-23	107	139	IPR011991	Winged helix-turn-helix DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009408	Biological Process	response to heat
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 533 aa Download sequence Send to blast
MVDDPATDAV VSWGPANNSF IVWNTPEFAR DLLPKYFKHN NFSSFVRQLN TYQVTCCLLP 60 AYARTSFLHI LAIYWTEAYL SLVKYASCAA NRYVLLENQY NPFVASKEGF RKVDPDKWEF 120 ANEGFLRGQK HLLKTINRRK PSHANNQVQV QQQQPQQQQQ QQQSQLQNAP MPSCVEVGKF 180 GMEEEIEMLK RDKNVLMQEL VRLRQQQQTT DHQLQTLGKR LHGMEQRQQQ MMSFLAKAMQ 240 SPGFLAQFVQ QNENSKRRIV AANKKRRLPK QDDGLNSESA LLDGQIIKYQ PMINEAAKAM 300 LRKILQQDTS PHRFESMGNS DNLLLENCMP SAQTFDSSSS TRNSAVTLAE VPGNSGMPYM 360 PTSSGLSAIC SSSSPPEMQR PVLDTNSSTQ LPNMSAVPSV PKAMTPGLSD ISIPGFPDLH 420 DLITEDAINI PVENFTMPGP ECIFPLPDEG SDDSVPMDPI DTDETDDTQK LPGIIDSFWE 480 QFLCASPLSI DNDEVDSGLL DTREAQEENG WTRTENLANL TEQMGLLSSN HRG

Sequence ? help Back to Top

Protein Sequence Length: 533 aa Download sequence Send to blast

MVDDPATDAV VSWGPANNSF IVWNTPEFAR DLLPKYFKHN NFSSFVRQLN TYQVTCCLLP  60
AYARTSFLHI LAIYWTEAYL SLVKYASCAA NRYVLLENQY NPFVASKEGF RKVDPDKWEF  120
ANEGFLRGQK HLLKTINRRK PSHANNQVQV QQQQPQQQQQ QQQSQLQNAP MPSCVEVGKF  180
GMEEEIEMLK RDKNVLMQEL VRLRQQQQTT DHQLQTLGKR LHGMEQRQQQ MMSFLAKAMQ  240
SPGFLAQFVQ QNENSKRRIV AANKKRRLPK QDDGLNSESA LLDGQIIKYQ PMINEAAKAM  300
LRKILQQDTS PHRFESMGNS DNLLLENCMP SAQTFDSSSS TRNSAVTLAE VPGNSGMPYM  360
PTSSGLSAIC SSSSPPEMQR PVLDTNSSTQ LPNMSAVPSV PKAMTPGLSD ISIPGFPDLH  420
DLITEDAINI PVENFTMPGP ECIFPLPDEG SDDSVPMDPI DTDETDDTQK LPGIIDSFWE  480
QFLCASPLSI DNDEVDSGLL DTREAQEENG WTRTENLANL TEQMGLLSSN HRG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	3e-16	1	142	27	123	Heat shock factor protein 1
5d5u_B	4e-16	1	139	36	129	Heat shock factor protein 1
5d5v_B	4e-16	1	139	36	129	Heat shock factor protein 1
5d5v_D	4e-16	1	139	36	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not induced by heat stress. {ECO:0000269\|PubMed:18064488}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF208543	0.0	KF208543.1 Triticum aestivum heat shock factor A1c (HsfA1c) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020176135.1	0.0	heat stress transcription factor A-1-like
Swissprot	Q84T61	0.0	HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBL	M7ZBL0	0.0	M7ZBL0_TRIUA; Heat stress transcription factor A-1
STRING	TRIUR3_08676-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5097	31	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16820.2	4e-98	heat shock factor 3

Publications ? help Back to Top
Chauhan H,Khurana N,Agarwal P,Khurana P Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress. Mol. Genet. Genomics, 2011. 286(2): p. 171-87 [PMID:21792744]