PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_08409-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NF-YA
Protein Properties Length: 399aa    MW: 44003.8 Da    PI: 10.5953
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_08409-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA106.32.5e-33292348158
        CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                      +ep+YVNaKQy++Il+RRq Rakle+e+kl  ksrkpylheSRh+hA++R+Rg+gGrF
  TRIUR3_08409-P1 292 EEPIYVNAKQYHAILRRRQLRAKLEAENKL-VKSRKPYLHESRHQHAMKRARGTGGRF 348
                      69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.5E-38290351IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115239.328291351IPR001289Nuclear transcription factor Y subunit A
PfamPF020458.7E-29293348IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.2E-24294316IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860296316IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.2E-24325348IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010262Biological Processsomatic embryogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0055046Biological Processmicrogametogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MAVTLSTPAS PPLLKKKTES DAFRARMATR RAAASSARAL LRRGDDTDSV AAILKKRNMT  60
AIAWQPYSTP RQQWQARKHQ TSRAGRRPIQ LKYVDVPTRT RAGPFPTAFL FYYYMPSQTS  120
LRIQASKPLL SCHLRADLSP GRCKPLELRA RAEAHEMRRK QNMQENGTIM IQFGQQVPNC  180
ESSASDSPQE VSGMSEGSFN EQNDQSGNRD GYAKSSDEGK MMSALSLGNS ETAYTPPKPD  240
RTHPFAISYP YADPYYGGAV AAYGAHAIMH PQMVGMVPSS RVPLPIEPAA AEEPIYVNAK  300
QYHAILRRRQ LRAKLEAENK LVKSRKPYLH ESRHQHAMKR ARGTGGRFLN AKEKSEASGG  360
GNASARSGHA GVPPDGGMFS KHDHTLPSGD FHYRARGGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-23292355265NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0787500.0KM078750.1 Triticum aestivum CCAAT-binding transcription factor B (NFYA-A3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020179090.11e-173nuclear transcription factor Y subunit A-7-like
TrEMBLM8A1A40.0M8A1A4_TRIUA; Nuclear transcription factor Y subunit A-9
STRINGTRIUR3_08409-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137338121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54160.17e-30nuclear factor Y, subunit A5