PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_06598-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 1337aa    MW: 151977 Da    PI: 7.6568
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_06598-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B389.33e-2811601246183
                       EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
               B3    1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83  
                       f+kv tpsdv+k++rlv+pk+fae++       + +++ l++ed+ g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F 
  TRIUR3_06598-P1 1160 FDKVVTPSDVGKLNRLVVPKHFAEKYfpldAAANDKGMLLSFEDRGGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLNAGDTVSFC 1246
                       89*************************99944445899***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF525403.5E-48260556IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3001.3E-13275464IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009311.2E-45291583IPR002182NB-ARC
PRINTSPR003641.5E-7296311No hitNo description
PRINTSPR003641.5E-7371385No hitNo description
PRINTSPR003641.5E-7488502No hitNo description
SuperFamilySSF520581.26E-186261002IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.101.9E-7699786IPR032675Leucine-rich repeat domain, L domain-like
PRINTSPR003641.5E-7751767No hitNo description
Gene3DG3DSA:3.80.10.101.9E-7890943IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:2.40.330.105.1E-3811561263IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-2811571248IPR015300DNA-binding pseudobarrel domain
CDDcd100171.04E-2411581245No hitNo description
PfamPF023622.6E-2511601246IPR003340B3 DNA binding domain
SMARTSM010192.4E-2011601256IPR003340B3 DNA binding domain
PROSITE profilePS5086313.8611601265IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0043531Molecular FunctionADP binding
Sequence ? help Back to Top
Protein Sequence    Length: 1337 aa     Download sequence    Send to blast
MRMGIDLTDE DEDEEPDLRK RKSLVRSAFI YDPTTATFSD PVALQRVANS TVLEESFLLT  60
TSDISMLFDG SVSASLGAMR PLVEKLDMLL ASAQEYSSLP KRIKDGMQLL KHDVEVISFY  120
LDELTEVEDP PPMAKCWMNE AHDLSYDMED YIDSLLFVPP DCFIKKKKKR RRRKTKKMMI  180
KKRLKWYKQI VFRAQVSEYG IKTSKIIHVN VSRLPNKPKI AKTISEFRSY VQEAIERYDR  240
YSLQCCSTLR RRFLSTSIML PMPYEEAAHI VIDGRMNEFI NSLAANDAAD QQQLKVVSVL  300
GSGCVGKTTL ANVLYDRIRM QFECSAFIQV SKNPDMKRLF RDLFLQLHQK KKPQPANCND  360
LDINDINISK HLQDKSLWVI IDFCWVSLPQ LAWDKRYLIV IDDLWDPSVW DIIKYAFPKG  420
NCGSRIIITT QIDDVALTCC CDHSEHVFEM KPLDNDHSRK LFFDKLFGSE SDCPEEFKQV  480
SKEIVDICGG LPLATINIAS HLANQETEVS MDFLAYTRDT LRSYLWSNST SERTKQVLNL  540
SYNCLPHYLK TCLLYLHIYP EASIIWKDDL VKQWVAEGFI ATRKGEEQDQ EMIEKAAGLY  600
FDALIERRFI QPSYINYNNK VLSCTVHEVV RDLIGHKSAE ENFIVVVDCN RKNIALSHKV  660
RRLSLVFGDA KYAKIPANIT KSQVRSLRFY GLFECMPCIR EFKVLRLLDL QLFGYCGDPD  720
PIDLTGISEL FQLRYLKIAS DVCIRLPNRM QGLKCLETLD ILNATRVTAI PWDIIHLPHL  780
LHLILPVDTN LLDWIGSMSD PVIREWSLGK LNYLQDLHLT FFSTLPFYNH LETSMEVLGS  840
LIGGHGNLKT IVVAHGPSVK NIVNHSIGYG ASKAIIPLFR MAPPPLLQRF EFSLHNCCIF  900
SQIPPWVEKH GNLCILKIPV RELKMICVDI LGGLHALTTL SLYVETAPIH KIIFNKAAGF  960
SVLKYFKLRC TTGIPWLKFE ADAMPNLLKL KLVFNAIPPM DQPLFFTSGQ LRHKVRHEHG  1020
TAVISIEHMP GLKEISAQFE GAVSDLEYAS RTFISNHPSN PTINMQLVGC SSNVDGSRKR  1080
KQQPDDTLKD DYAKRLEIPA DKRIATSLEF SSSLDDLPMS VSQFFDCPAF SICQPVESSS  1140
RLDDAEITPS GSDVGREHIF DKVVTPSDVG KLNRLVVPKH FAEKYFPLDA AANDKGMLLS  1200
FEDRGGKLWR FRYSYWNSSQ SYVMTKGWSR FVKEKKLNAG DTVSFCRGAT LATRDRLFID  1260
WKCRAVVHDS LPKLDRPSRA VQKRVRLFGV NLDTQQPQGG ELTHDANAGA AGVEFSAAAS  1320
SPSSSQTEAH SSLDLGM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A3e-49115612674116B3 domain-containing transcription factor NGA1
5os9_B3e-49115612674116B3 domain-containing transcription factor NGA1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1164176KKKKKRRRRKTKK
2165170KKKKRR
3166171KKKRRR
4167173KKRRRRK
5168173KRRRRK
6168176KRRRRKTKK
7169182RRRRKTKKMMIKKR
8170175RRRKTK
910761081SRKRKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020199675.10.0putative disease resistance RPP13-like protein 2
TrEMBLT1LNZ70.0T1LNZ7_TRIUA; Uncharacterized protein
STRINGTRIUR3_06598-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP8320712
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.12e-50B3 family protein