PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_05978-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 274aa    MW: 29425.5 Da    PI: 8.1416
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_05978-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.31.6e-1463109455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       h ++Er+RR++iN +f eL +++P +     kK++Ka+iL  Av+Y+k+ q
  TRIUR3_05978-P1  63 DHIMAERKRREKINRRFIELSTVIPGL-----KKMDKATILSDAVRYVKEQQ 109
                      699************************.....9****************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.56759108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.72E-1763121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.1E-1263109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-1763121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.19E-1664113No hitNo description
SMARTSM003536.5E-1565114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MSWNFTSAVA QPSNEAAPSP ATAPSARALD GPGVVEQAHV SPPSRRASAK SAARAGHAPY  60
AQDHIMAERK RREKINRRFI ELSTVIPGLK KMDKATILSD AVRYVKEQQE KLRALEDRNR  120
RSAAVDSVVL VKKPPAAVPE DDDVGGCCPS PSAGAVAGST TATTTGSALP EIEARISESD  180
VMVRIHCEDA KGVLVRLLAE VEGLHLSITH ANAIPFPACT LIITVTAKAS YSQQSAAHEE  240
ISFYRCGFDY IVFGQKFFYC ILHNSLPAIV SLSF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16772ERKRRE
26873RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3646670.0AK364667.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2027G10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020175438.11e-125transcription factor NAI1-like
TrEMBLM8ACF80.0M8ACF8_TRIUA; Transcription factor bHLH19
STRINGTRIUR3_05978-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92731143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.12e-33bHLH family protein