PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | TRIUR3_05950-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 146aa MW: 16305.8 Da PI: 7.0729 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 121.4 | 1.1e-37 | 5 | 145 | 97 | 234 |
GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188 ++I++av+g +++Hi+ ++is G+QWp Ll La+R++gpp++RiTg++ p++g + +ee g+rL+++A+++gvpf+f++ +a++ ed TRIUR3_05950-P1 5 FSTNTIYKAVAGRRKLHIVHYGISTGFQWPDLLGLLANREGGPPEVRITGINTPQPGpcPAALMEEAGHRLNNYASQFGVPFKFHA-IASKPED 97 56789****************************************************999999***********************.79***** PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvksl 234 ++ e+L+++p+E+l+V++ ++ +l+des++ + +rd vLk+++++ TRIUR3_05950-P1 98 VRAEDLHIDPDEVLVVSSLYEFRTLMDESLTFDMvsPRDMVLKTIRKM 145 ****************************98765555**********97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 27.886 | 1 | 146 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.7E-35 | 5 | 145 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 146 aa Download sequence Send to blast |
VGLLFSTNTI YKAVAGRRKL HIVHYGISTG FQWPDLLGLL ANREGGPPEV RITGINTPQP 60 GPCPAALMEE AGHRLNNYAS QFGVPFKFHA IASKPEDVRA EDLHIDPDEV LVVSSLYEFR 120 TLMDESLTFD MVSPRDMVLK TIRKMR |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 2e-18 | 4 | 126 | 95 | 218 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK375062 | 1e-133 | AK375062.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3084L15. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020162692.1 | 2e-93 | scarecrow-like protein 34 | ||||
TrEMBL | T1LM94 | 1e-105 | T1LM94_TRIUA; Uncharacterized protein | ||||
STRING | TRIUR3_05950-P1 | 1e-105 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP22738 | 4 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G07530.1 | 5e-37 | SCARECROW-like 14 |