PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

TRIUR3_05949-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

GRAS

Protein Properties

Length: 557aa MW: 62667.1 Da PI: 5.5013

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_05949-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	313.7	4.1e-96	181	551	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 +lL++cA+av + d ++a +lL ++++ asp gd +qRla f+e+L++ l++++s++y l++++ts + a+++f ++ + ++s+ TRIUR3_05949-P1 181 HTLLIHCAKAVVD-DRRRAGELLMEIQQYASPIGDGTQRLAYWFAEGLESWLTGTGSQVYGMLTAKATS---AMAHSEAYQVFISTCCFRNVSF 270 679******97.899******************************************999999...7888899*********** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187 l aN+aI +a+ g +r+Hi+D++ s+G+QWp Ll+ La+R++g+p++RiT ++ p++g + +ee+g+rL+++A+el+vpf++++ + +++ TRIUR3_05949-P1 271 LFANRAIFNAAVGRSRLHIVDYGFSYGFQWPELLRWLAARDGGSPEVRITHIDLPQPGlhPGKHMEEIGNRLTDIARELDVPFKYRA-ILAEWQ 363 *****************************************************9999**********************.6999 PP GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279 ++ +e+L+++p+E+laVn ++ +l+de v + s +rd vL+ + +++P+v+v + + +h ++ Fl rf al +ysalfd+l+a++pres TRIUR3_05949-P1 364 TVCIEDLDLEPDEVLAVNDLYNFRTLMDECVVMGSpnPRDVVLSNISKMKPDVFVQSTVNGSH-GTFFLSRFRGALFFYSALFDMLDATMPRES 456 ****************************99988779********************9.789*********************** PP GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 + r +Er+++g+ + n++a eg++r+er et+++W+ r ++aG++++pl+++++k a+ ++++ + + + ++e++++l++gWk+r L++ S W TRIUR3_05949-P1 457 KLRLALERAVFGWVVLNAIAYEGKDRVERGETYKHWQVRNQRAGLRQLPLDSETVKMARDMVKNEYHKDFVINEDHQWLLQGWKGRILLAHSTW 550 ************************************************************99888*********************** PP GRAS 374 r 374 + TRIUR3_05949-P1 551 E 551 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	54.968	154	531	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.4E-93	181	551	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 557 aa Download sequence Send to blast
LSLPYITQIL MEEEDDVDED NPALLKAQQP FAQILSMHAS TLMADKGSAL ASDVHSPSSA 60 IFKFKGVDEV RSLLLLANGE YNTHIFSTAF LKGMEEAKKL LPTNCELTAT GEQDQPKEKS 120 GIGHKDSSDE VEADVSRTNR LVEARACEVF DFDQMCSSMD NESGNSNKKG RKSKARVIDL 180 HTLLIHCAKA VVDDRRRAGE LLMEIQQYAS PIGDGTQRLA YWFAEGLESW LTGTGSQVYG 240 MLTAKATSAM AHSEAYQVFI STCCFRNVSF LFANRAIFNA AVGRSRLHIV DYGFSYGFQW 300 PELLRWLAAR DGGSPEVRIT HIDLPQPGLH PGKHMEEIGN RLTDIARELD VPFKYRAILA 360 EWQTVCIEDL DLEPDEVLAV NDLYNFRTLM DECVVMGSPN PRDVVLSNIS KMKPDVFVQS 420 TVNGSHGTFF LSRFRGALFF YSALFDMLDA TMPRESKLRL ALERAVFGWV VLNAIAYEGK 480 DRVERGETYK HWQVRNQRAG LRQLPLDSET VKMARDMVKN EYHKDFVINE DHQWLLQGWK 540 GRILLAHSTW EADGGSS

Sequence ? help Back to Top

Protein Sequence Length: 557 aa Download sequence Send to blast

LSLPYITQIL MEEEDDVDED NPALLKAQQP FAQILSMHAS TLMADKGSAL ASDVHSPSSA  60
IFKFKGVDEV RSLLLLANGE YNTHIFSTAF LKGMEEAKKL LPTNCELTAT GEQDQPKEKS  120
GIGHKDSSDE VEADVSRTNR LVEARACEVF DFDQMCSSMD NESGNSNKKG RKSKARVIDL  180
HTLLIHCAKA VVDDRRRAGE LLMEIQQYAS PIGDGTQRLA YWFAEGLESW LTGTGSQVYG  240
MLTAKATSAM AHSEAYQVFI STCCFRNVSF LFANRAIFNA AVGRSRLHIV DYGFSYGFQW  300
PELLRWLAAR DGGSPEVRIT HIDLPQPGLH PGKHMEEIGN RLTDIARELD VPFKYRAILA  360
EWQTVCIEDL DLEPDEVLAV NDLYNFRTLM DECVVMGSPN PRDVVLSNIS KMKPDVFVQS  420
TVNGSHGTFF LSRFRGALFF YSALFDMLDA TMPRESKLRL ALERAVFGWV VLNAIAYEGK  480
DRVERGETYK HWQVRNQRAG LRQLPLDSET VKMARDMVKN EYHKDFVINE DHQWLLQGWK  540
GRILLAHSTW EADGGSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_B	2e-40	182	550	89	472	Protein SHORT-ROOT
5b3h_B	6e-41	182	550	35	418	Protein SHORT-ROOT
5b3h_E	6e-41	182	550	35	418	Protein SHORT-ROOT
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020172172.1	0.0	scarecrow-like protein 33
TrEMBL	T1LM93	0.0	T1LM93_TRIUA; Uncharacterized protein
STRING	TRIUR3_05949-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP231	31	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-123	GRAS family protein