PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_04794-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 344aa    MW: 38204.1 Da    PI: 6.2927
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_04794-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.93.8e-05118140123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y+C+ Cg+ F++   L  H+++H
  TRIUR3_04794-P1 118 YSCSFCGREFRSAQALGGHMNVH 140
                      99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.57E-6115144No hitNo description
Gene3DG3DSA:3.30.160.603.0E-4116142IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.002118140IPR015880Zinc finger, C2H2-like
PfamPF139124.8E-6118141IPR007087Zinc finger, C2H2
PROSITE profilePS5015712.217118145IPR007087Zinc finger, C2H2
PROSITE patternPS000280120140IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MDLTFMILSI ILPGQHGHFD ISCFEETVTL PVTNWMCEEK IGPGPTRVLQ TTKAKYWMIT  60
RRKQGDQKAP AVFSTPHIPV GSGGGTSSAT YYESWEERAF AQDSAGSLGG CIWPPRSYSC  120
SFCGREFRSA QALGGHMNVH RRDRARLKLS GMVEEGGGVD VHGMPLHQGY MIQPLPCPPP  180
RPSAPSTEAN PNSVRSFLSD PGRSLVDAAT ARTIWGKQVL AAPLVSPSDT QEHGEKEVFL  240
HDAEVRSEQE LRVGGGELKL GLLGRRTRSV FEDDKEDDER IVHLCRKRRR IDLEATEFVL  300
SSSSSEHLQR DDPRDDGDDD NRRVKVLKLC PSTPAEELDL ELRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A4e-12113140229superman protein
2l1o_A4e-12113140229Transcriptional regulator SUPERMAN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1285289RKRRR
2286290KRRRI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2494380.0AK249438.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf32c06, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020201188.11e-171uncharacterized protein LOC109787040
TrEMBLM7YVU50.0M7YVU5_TRIUA; Putative transcriptional regulator RABBIT EARS
STRINGTRIUR3_04794-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95942840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06070.11e-25C2H2 family protein