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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_04644-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | AP2 | ||||||||
Protein Properties | Length: 370aa MW: 41387.7 Da PI: 10.6134 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 46.6 | 8.3e-15 | 40 | 100 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse....ngkr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++ ++k+ ++++lg +g +e Aa+a++ a++k++g TRIUR3_04644-P1 40 SSYRGVTRHRWTGRFEAHLWDkNTWtepqRKKKgRQVYLGAYGGEEAAARAYDLAALKYWG 100 67*******************8777775333446*************************98 PP | |||||||
2 | AP2 | 30.1 | 1.2e-09 | 143 | 177 | 1 | 38 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgt 38 s+y+GV +++ +g+W+A+I + g +k+ +lg++g TRIUR3_04644-P1 143 SKYRGVARHHHNGKWEARIGRvF---G-NKYLYLGTYGI 177 89****99**********99966...3.6********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.3E-13 | 40 | 100 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.7E-15 | 40 | 110 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.6E-14 | 41 | 109 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.533 | 41 | 108 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.2E-24 | 41 | 114 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.1E-6 | 143 | 177 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.68E-5 | 143 | 176 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.5E-4 | 144 | 175 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 10.086 | 144 | 279 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.5E-6 | 144 | 285 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.1E-4 | 254 | 280 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 370 aa Download sequence Send to blast |
MAKQRRSGAG AGNVASNAVR PKPERTRRSV PRGRPSQRTS SYRGVTRHRW TGRFEAHLWD 60 KNTWTEPQRK KKGRQVYLGA YGGEEAAARA YDLAALKYWG RGTVLNFSLS SYDQELKEME 120 EQSREEYIGS LRRKSTGFSR GVSKYRGVAR HHHNGKWEAR IGRVFGNKYL YLGTYGILIE 180 VSGCEKKNLR RDLSMSVDTT GPGAFEGSEL LSPVVDALRP NPKSFEDKMY HKKRNSARYI 240 LNAKADGFGK SRLTQEEATM AYDIAAIEHC GLNAVINFDV SRYIKWHHRC HADDAGGLNT 300 PRCVNDRLQP PQTSPTSHAA SALGPLLKAP RLKEMMERVA ASQISTNSLS SSSCPPSAPP 360 PTTQRRGHQP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020165519.1 | 1e-112 | AP2-like ethylene-responsive transcription factor At1g16060 | ||||
TrEMBL | T1LIT9 | 0.0 | T1LIT9_TRIUA; Uncharacterized protein | ||||
STRING | TRIUR3_04644-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3319 | 36 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79700.2 | 3e-72 | AP2 family protein |