PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_04238-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 870aa    MW: 96080.3 Da    PI: 7.1564
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_04238-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.65.3e-19248347198
                      EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                      f+kvl+ sd+++ grlvlpk +ae++   ++++e++ lt++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  ++
  TRIUR3_04238-P1 248 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGRPLTIQDAKGKEWHFQFRFwpNNNSRMYVLE-GVTPCIQSLQLQAGDTVTFSRIE-PGG 339
                      99**************************555567778***************9989999999***9.********************887.777 PP

                      ..EEEEE- CS
               B3  91 elvvkvfr 98 
                      +lv+++++
  TRIUR3_04238-P1 340 KLVMGFRK 347
                      77877776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-31239354IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.88E-21245348IPR015300DNA-binding pseudobarrel domain
CDDcd100173.63E-24246347No hitNo description
SMARTSM010194.0E-22248348IPR003340B3 DNA binding domain
PROSITE profilePS5086311.547248349IPR003340B3 DNA binding domain
PfamPF023624.1E-16248347IPR003340B3 DNA binding domain
PROSITE profilePS5105014.811544594IPR011124Zinc finger, CW-type
PfamPF074967.4E-12549591IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 870 aa     Download sequence    Send to blast
MKNPGPQPVS CQVAPKLFLP PPNNQRLFGK SDELLPGRPL ESPSLMLDSR SDDIAIITKS  60
NHPFMVKNLE IGQSSNILRQ KEIENGARQI KWEQPTLSIG DMGRMPFLIR PQSALESPQS  120
QCTRRDDNRD PTADSTTSES ISEAGLSMSL GIANNGNKME ATSTMERPMV SPTTPFSEGR  180
ELATTLSPFQ HAQRARHFLT RPPRVAEGAA FDPMRDGFPH LRVARPPAEG RGRNQLLPRS  240
NSTIVPLFEK VLSASDAGRI GRLVLPKACA EAYFPPISQP EGRPLTIQDA KGKEWHFQFR  300
FWPNNNSRMY VLEGVTPCIQ SLQLQAGDTV TFSRIEPGGK LVMGFRKATN TVSLPVSLNF  360
KAIRLTFSRI EPGGKLVMGF RKATNTVSLP DSQISAIATG SLLGDSFFSN TNENLSIVSG  420
YSGFLQSMKG AADLQPSSLF DHHANSADGD VSWLKADRFG GRPDEGSFQF LHKRSRNIGS  480
KSRRLLMDNE EALELKLSWE EAQELLRPAP SAKPTVVMIE DYEFEEYDEP PVFAKRSIFT  540
SRSTGEQDQW IQCDDCSKWR RLPLNVIIAS KWRCADNTWD PKSCSCSAPE ELAHKELQSI  600
LQQYEEIRRR KSNYFLKQSI PEMDASSLDA LATAAVFGEV GNQGAASVAT TTKHPRHRPG  660
CTCIVCIQPP SGKGPKHNPA CTCNVCMTVR RRFKTLMMRK KQRQSEREEA EASKRIAWVG  720
RDEPEGSNLS RSPQTVDTAR DCDVIMFDKA DANKGHIDLN FHPASREEEQ QHGGQPRVSM  780
VSLLEVANRP LESYMKQNGL VSLAAEQGSS SGTATVPSQP APMESEERPS DEGRAVAVEQ  840
EREPVDNMAV DEAACENQGN AASASDIAAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A4e-6024135017126B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1689700RRRFKTLMMRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3586790.0AK358679.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1081G10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020158213.10.0B3 domain-containing protein Os07g0679700 isoform X1
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLT1LHS10.0T1LHS1_TRIUA; Uncharacterized protein
STRINGTRIUR3_04238-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP65193748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-158HSI2-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]