PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_03730-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 52aa MW: 5614.58 Da PI: 11.4069 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 50.8 | 2.1e-16 | 10 | 48 | 2 | 40 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40 ri n+ r tf kR +g+lKKA EL vLCd++ v++f TRIUR3_03730-P1 10 RIANDVSRRATFGKRSAGLLKKARELAVLCDVDLGVLVF 48 89**********************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.0E-15 | 1 | 52 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 23.058 | 1 | 52 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.09E-19 | 1 | 51 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-18 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.4E-17 | 10 | 51 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-18 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-18 | 38 | 52 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 52 aa Download sequence Send to blast |
MGRGRVEIRR IANDVSRRAT FGKRSAGLLK KARELAVLCD VDLGVLVFDG AG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK375464 | 1e-56 | AK375464.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3095B13. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020154090.1 | 2e-27 | MADS-box transcription factor 29-like | ||||
Swissprot | Q2QQA3 | 5e-18 | MAD20_ORYSJ; MADS-box transcription factor 20 | ||||
TrEMBL | A0A3B6RML8 | 7e-26 | A0A3B6RML8_WHEAT; Uncharacterized protein | ||||
TrEMBL | N1R5A2 | 9e-26 | N1R5A2_AEGTA; MADS-box transcription factor 29 | ||||
TrEMBL | T1LGE1 | 8e-27 | T1LGE1_TRIUA; Uncharacterized protein | ||||
STRING | EMT33382 | 1e-26 | (Aegilops tauschii) | ||||
STRING | TRIUR3_03730-P1 | 1e-27 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP129 | 38 | 398 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57230.2 | 6e-19 | AGAMOUS-like 16 |