PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_03541-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 430aa    MW: 46398.6 Da    PI: 9.1054
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_03541-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS264.63.4e-8111142941374
             GRAS  41 laayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLas 134
                        + +   L+  l  ++ + ++a    ++++ ++  +l a+k+fse+sP+l+f+h+t+ qa+l+++ g+ ++H++Dfdi+ G QW++L+q+La+
  TRIUR3_03541-P1 111 GCHAVSTTLSVALDTTGAHASSAAV--ASTPVDVLLKLGAYKAFSELSPVLQFAHFTCVQAVLDELGGAGCIHVLDFDIGVGEQWASLMQELAQ 202
                      5556666677777775555555444..4444579999********************************************************* PP

             GRAS 135 RpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL.rvkpgEalaVnlvlqlhrlldesvsleserdev 227
                      R+   + l++T+++ p++++  el+ ++e+La+fA+elgvpf+f v+   +l+++++ eL ++  g+a+aV+l +   +      +     ++v
  TRIUR3_03541-P1 203 RRP-GAALKVTALVLPSTHHPLELQLIHENLANFAAELGVPFQFVVF---NLDSVDPTELlAIAGGDAIAVHLPVGSVHAA----A----VPSV 284
                      965.589**************************************98...899998877637777**********998887....4....456* PP

             GRAS 228 LklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerlee 321
                      L+lv++l +k+v+ v++  d+++ +F++++l+a++ ++ l++sl+a  ++e + ++k+Er+l++++i+++v+ ++++  +   +l  Wr ++++
  TRIUR3_03541-P1 285 LHLVRRLGAKLVISVDRSGDRGELPFAAHLLQAFQSCAFLLESLDAV-GTEPDVASKIERFLIQPKIESCVMRRHQA-AAAGDKLLPWRTMFTS 376
                      ********************************************998.7888************************9.888889********** PP

             GRAS 322 aGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      aGF pv++s++a++qa++ll+kv+++g+rve++ gslvl W++ +LvsvSaWr
  TRIUR3_03541-P1 377 AGFVPVHISNFAEAQADSLLKKVPVRGFRVEKRAGSLVLHWQRAELVSVSAWR 429
                      ****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098533.05845409IPR005202Transcription factor GRAS
PfamPF035141.2E-78111429IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
GO:0016021Cellular Componentintegral component of membrane
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MTERRTDGTS AFNTRTVGRD VSSFLIQQGK ERLMEIQQHD GVVVEVAGSR QGFAKRKRGG  60
RVVTGGRRQG FRYLWALSAV VVFGHFGKIV QLSLVTLPLQ PPQIRGPHPR GCHAVSTTLS  120
VALDTTGAHA SSAAVASTPV DVLLKLGAYK AFSELSPVLQ FAHFTCVQAV LDELGGAGCI  180
HVLDFDIGVG EQWASLMQEL AQRRPGAALK VTALVLPSTH HPLELQLIHE NLANFAAELG  240
VPFQFVVFNL DSVDPTELLA IAGGDAIAVH LPVGSVHAAA VPSVLHLVRR LGAKLVISVD  300
RSGDRGELPF AAHLLQAFQS CAFLLESLDA VGTEPDVASK IERFLIQPKI ESCVMRRHQA  360
AAAGDKLLPW RTMFTSAGFV PVHISNFAEA QADSLLKKVP VRGFRVEKRA GSLVLHWQRA  420
ELVSVSAWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-259742841378Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3680480.0AK368048.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2067A22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020194385.10.0scarecrow-like protein 6
TrEMBLM8ART70.0M8ART7_TRIUA; Uncharacterized protein
STRINGTRIUR3_03541-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67232954
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-77GRAS family protein