PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_03112-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 372aa    MW: 42213.2 Da    PI: 8.0273
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_03112-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.37.6e-153053613286
                      --SEEEEEE.TTS-EEEEEE....EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-S CS
               B3  32 esktltled.esgrsWevkliy..rkksgr.yvltkGWkeFvkangLkegDfvvFkldg 86 
                      +  ++tl++ e+++sWev+      ++s++   lt+GWk F+k+n+Lk+gD+++Fk+++
  TRIUR3_03112-P1 305 C--KITLKSvERNKSWEVEGVNyhPGTSRSyNCLTRGWKAFCKENELKAGDICTFKVVN 361
                      3..7999998999******94446444444689***********************654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.1E-5115210IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-6116209IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508637.034160212IPR003340B3 DNA binding domain
SMARTSM010190.0042280372IPR003340B3 DNA binding domain
CDDcd100172.28E-12293358No hitNo description
SuperFamilySSF1019363.14E-13294369IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.0E-14296369IPR015300DNA-binding pseudobarrel domain
PfamPF023622.7E-12304369IPR003340B3 DNA binding domain
PROSITE profilePS5086311.321306372IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MGLSSNCAKT IKIQQCVKLP DSKYLHINDE LAGCFGTEDH GDGRTALVLS PFGKNVWPVK  60
FVAAHGIGVG WYLVIRHEGC GVLTLKAFDA SFVIKEFGLT ITVLSPAEIE NAFARKPQFI  120
VPLQRSFMEK MPIPPEFLQR GYISEEDLNR PRPIATFLTS WHIELKKDGP NVFFTGSEWP  180
KFLAYFEIAE TDVLLIKYQG CMNFSFETFQ NGNNEHIEEK TSSSQQSEQS PGAQSQEEEH  240
VCSRKRKQSE VKSMLDGSTT SQHRKKALCE LGSTGSQAWL RKEINELALK RYLHFPARFG  300
FLERCKITLK SVERNKSWEV EGVNYHPGTS RSYNCLTRGW KAFCKENELK AGDICTFKVV  360
NSTLWHVVID HC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1242247SRKRKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020181882.10.0putative B3 domain-containing protein Os04g0346900 isoform X5
TrEMBLT1LER80.0T1LER8_TRIUA; Uncharacterized protein
STRINGTRIUR3_03112-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31630.14e-07B3 family protein