PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_02784-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

bZIP

Protein Properties

Length: 490aa MW: 52321.4 Da PI: 10.3739

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_02784-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	40	8.8e-13	15	74	3	62
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 + +r+ r+++NRe+A+ sRqRKk ++eeLeekvk++ + +L ++++ + e a+l+++ TRIUR3_02784-P1 15 DTRRAARLIRNRESAQLSRQRKKRYVEELEEKVKSMNSVINDLNSKISFIVAENATLRQQ 74 6799*********************************99****9999999988887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.5E-13	13	77	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.036	15	75	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	4.0E-12	15	75	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.29E-12	17	75	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.1E-15	17	75	No hit	No description
CDD	cd14704	1.12E-19	18	69	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0042538	Biological Process	hyperosmotic salinity response
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005783	Cellular Component	endoplasmic reticulum
GO:0016021	Cellular Component	integral component of membrane
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 490 aa Download sequence Send to blast
AGDAGEGGAG GEGEDTRRAA RLIRNRESAQ LSRQRKKRYV EELEEKVKSM NSVINDLNSK 60 ISFIVAENAT LRQQLGSGGG NCPPPGMYPP GAVPGMHFPW VPGYAMRPHG SHVPLVPIPR 120 LKPQQQVTAT KATKKPENKK AAESKSKSKT KTKKVASVSL LGLMLVMLVF GAFVPGFNHN 180 FGLSGGSDNA MFRNFGQPHD RVVNVNNHGQ APKGGLNNSD MTGVDSGMMI GTDGSADQKH 240 QPPLNSSETL PALLYVPRNG KHVKINGNLI IHSVLASEKA VAHGTSQHNR DQSGIDHKET 300 SPAIARHLSL PGNNMNPQEK SPVDGPLPQW FREGMAGPIL NSGMCSEVFQ FDISAATNSG 360 GIIPASPAVN SSSVNATRKV PTPAPAYYGK LKNRRIMYNE AIPLTGKTAN NTGPFNRTSE 420 SSKLPDKKPA SSVVVSVLAD PREAGDGDSD PRMTPKSLSR IFVVVLLDGV RYVTYSCTLP 480 FKGASPHLVN

Sequence ? help Back to Top

Protein Sequence Length: 490 aa Download sequence Send to blast

AGDAGEGGAG GEGEDTRRAA RLIRNRESAQ LSRQRKKRYV EELEEKVKSM NSVINDLNSK  60
ISFIVAENAT LRQQLGSGGG NCPPPGMYPP GAVPGMHFPW VPGYAMRPHG SHVPLVPIPR  120
LKPQQQVTAT KATKKPENKK AAESKSKSKT KTKKVASVSL LGLMLVMLVF GAFVPGFNHN  180
FGLSGGSDNA MFRNFGQPHD RVVNVNNHGQ APKGGLNNSD MTGVDSGMMI GTDGSADQKH  240
QPPLNSSETL PALLYVPRNG KHVKINGNLI IHSVLASEKA VAHGTSQHNR DQSGIDHKET  300
SPAIARHLSL PGNNMNPQEK SPVDGPLPQW FREGMAGPIL NSGMCSEVFQ FDISAATNSG  360
GIIPASPAVN SSSVNATRKV PTPAPAYYGK LKNRRIMYNE AIPLTGKTAN NTGPFNRTSE  420
SSKLPDKKPA SSVVVSVLAD PREAGDGDSD PRMTPKSLSR IFVVVLLDGV RYVTYSCTLP  480
FKGASPHLVN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in endoplasmic reticulum (ER) stress response. Acts as ER stress sensor and activates the transcription factor BZIP50 and the chaperone BIP1. {ECO:0000269\|PubMed:22050533, ECO:0000269\|PubMed:22084314}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by dithiothreitol- and tunicamycin-induced endoplasmic reticulum (ER) stress response. {ECO:0000269\|PubMed:22084314}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK362628	0.0	AK362628.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2008O22.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020152277.1	0.0	bZIP transcription factor 39-like
Swissprot	Q6AU90	0.0	BZP39_ORYSJ; bZIP transcription factor 39
TrEMBL	T1LDX7	0.0	T1LDX7_TRIUA; Uncharacterized protein
STRING	TRIUR3_02784-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8228	35	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40950.1	4e-89	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349] Takahashi H,Kawakatsu T,Wakasa Y,Hayashi S,Takaiwa F A rice transmembrane bZIP transcription factor, OsbZIP39, regulates the endoplasmic reticulum stress response. Plant Cell Physiol., 2012. 53(1): p. 144-53 [PMID:22084314] Ohta M, et al. Analysis of rice ER-resident J-proteins reveals diversity and functional differentiation of the ER-resident Hsp70 system in plants. J. Exp. Bot., 2013. 64(18): p. 5429-41 [PMID:24153418] Cheng Q, et al. An alternatively spliced heat shock transcription factor, OsHSFA2dI, functions in the heat stress-induced unfolded protein response in rice. Plant Biol (Stuttg), 2015. 17(2): p. 419-29 [PMID:25255693]