PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_02469-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family G2-like
Protein Properties Length: 245aa    MW: 26878.8 Da    PI: 9.4189
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_02469-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1031.8e-3272125255
          G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  TRIUR3_02469-P1  72 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 125
                      9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.24E-1669126IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.3E-2970126IPR009057Homeodomain-like
TIGRFAMsTIGR015578.5E-2472126IPR006447Myb domain, plants
PfamPF002491.3E-773124IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
YSNHISNHYH HRMNALLKPI RGVPIYHHHP SFQQLQHQHM AMAYRSSGVG GGGGFLSSRS  60
RFPPGRRSVR APRMRWTTTL HARFVHAVEL LGGHERATPK SVLELMDVKD LTLAHVKSHL  120
QMYRTIKSTD KPMTSPGQNE GFDNGSAGEI SDESLPEALN THRGTDQNGT SANSHSSSSY  180
NGGLWSNSSR VGWPGLGTNS TENRGQCHKE ADASKSLEMS AEMNVSCISD QTSSPPVPNL  240
EFTLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-1673127458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-1673127458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-1673127458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-1673127458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-1673127458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-1673127458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-1673127458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-1673127458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269|PubMed:11525739, ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:17307928}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00174DAPTransfer from AT1G32240Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1016684e-51FP101668.1 Phyllostachys edulis cDNA clone: bphyst006o10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020157571.11e-166probable transcription factor KAN2 isoform X2
SwissprotQ9C6162e-47KAN2_ARATH; Probable transcription factor KAN2
TrEMBLT1LD340.0T1LD34_TRIUA; Uncharacterized protein
STRINGTRIUR3_02469-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47213665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.11e-41G2-like family protein
Publications ? help Back to Top
  1. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]