PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_02308-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

HSF

Protein Properties

Length: 460aa MW: 51172.3 Da PI: 5.881

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_02308-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	104.5	8.9e-33	105	196	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 Fl+k+y++++d+++++++sws+ +ns+vv+d ++f+ +Lp++Fkhsnf+ FvRQLn+YgF+kv+ ++ weF+++ F +g+++ll+ TRIUR3_02308-P1 105 FLTKTYDMVDDRSTDNVVSWSAGNNSLVVWDLHRFSAVLLPRHFKHSNFSTFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQRHLLK 189 9**************************************************************999.........************* PP XXXXXXX CS HSF_DNA-bind 96 kikrkks 102 +i+r+++ TRIUR3_02308-P1 190 NIRRRRH 196 **975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	2.5E-55	101	194	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	3.1E-35	102	194	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	2.18E-32	103	194	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	8.0E-29	105	194	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	6.1E-18	105	128	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	6.1E-18	143	155	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	6.1E-18	156	168	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 460 aa Download sequence Send to blast
MAPPPPPRPP RPPPPPPAAE RRVRSRHGRR STAIFSSRAR EQRYGEEGFG VVAWLGGFLG 60 FGCMDPMPSL VKVEEEDGHG TGDSPGATAA PRPLEGLRDA KPSLFLTKTY DMVDDRSTDN 120 VVSWSAGNNS LVVWDLHRFS AVLLPRHFKH SNFSTFVRQL NTYGFRKVDP DRWEFANEGF 180 LRGQRHLLKN IRRRRHPANT APNQQSLGSY LEVGHFGNHT DTDQLKRDKQ LLMAEVVKLR 240 QEQQSMKTHL KGMEERLHGT ERKQQQMTAF LARVFRNPEL LKQLVSLNGV RKELHDAMSK 300 KRRRSIDQGP EADDMGASGS LEQDSPVLSD PHESVELLGE VSVELLADGV PSELESSVAL 360 LADGIPPDLE GAAELLVDVI PSDINDSGVD TNGVKPQDFG LGTCEVQQNR AQGVLHDDFW 420 EELMSRALSD EDDNPVNVDG MDVMSEKTDH LVPNSPTRAT

Sequence ? help Back to Top

Protein Sequence Length: 460 aa Download sequence Send to blast

MAPPPPPRPP RPPPPPPAAE RRVRSRHGRR STAIFSSRAR EQRYGEEGFG VVAWLGGFLG  60
FGCMDPMPSL VKVEEEDGHG TGDSPGATAA PRPLEGLRDA KPSLFLTKTY DMVDDRSTDN  120
VVSWSAGNNS LVVWDLHRFS AVLLPRHFKH SNFSTFVRQL NTYGFRKVDP DRWEFANEGF  180
LRGQRHLLKN IRRRRHPANT APNQQSLGSY LEVGHFGNHT DTDQLKRDKQ LLMAEVVKLR  240
QEQQSMKTHL KGMEERLHGT ERKQQQMTAF LARVFRNPEL LKQLVSLNGV RKELHDAMSK  300
KRRRSIDQGP EADDMGASGS LEQDSPVLSD PHESVELLGE VSVELLADGV PSELESSVAL  360
LADGIPPDLE GAAELLVDVI PSDINDSGVD TNGVKPQDFG LGTCEVQQNR AQGVLHDDFW  420
EELMSRALSD EDDNPVNVDG MDVMSEKTDH LVPNSPTRAT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	2e-21	105	194	29	129	Heat shock factor protein 1
5d5v_B	2e-21	105	194	29	129	Heat shock factor protein 1
5d5v_D	2e-21	105	194	29	129	Heat shock factor protein 1
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	181	194	RGQRHLLKNIRRRR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat stress. {ECO:0000269\|PubMed:18064488}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG670306	0.0	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020187935.1	0.0	heat stress transcription factor A-2b-like
Swissprot	Q6VBB2	1e-154	HFA2B_ORYSJ; Heat stress transcription factor A-2b
TrEMBL	M8ARX3	0.0	M8ARX3_TRIUA; Heat stress transcription factor A-2b
STRING	TRIUR3_02308-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP308	37	231

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22830.1	3e-89	heat shock transcription factor A6B

Publications ? help Back to Top
Rezaei MK,Shobbar ZS,Shahbazi M,Abedini R,Zare S Glutathione S-transferase (GST) family in barley: identification of members, enzyme activity, and gene expression pattern. J. Plant Physiol., 2013. 170(14): p. 1277-84 [PMID:23664583]