PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_02033-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 673aa    MW: 76658.5 Da    PI: 5.7937
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_02033-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.61.5e-15146232297
                      EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
               B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                      f +l  s+++ ++ +++p  f  ++ ++  ++ +++l+ +sg++W v+l   k sg+ ++++GWkeF ++n++  g  +vF++dg+s+f   v+
  TRIUR3_02033-P1 146 FRTL-ISYSFMEH-MTIPVGFH-KYLED--CTGMVSLRGPSGNKWPVEL--AKISGELLFARGWKEFLSDNRIGYGYLLVFRYDGQSQF--SVT 230
                      5555.35566666.89999997.66544..6779***************..*********************************99999..777 PP

                      EE CS
               B3  96 vf 97 
                      +f
  TRIUR3_02033-P1 231 IF 232
                      66 PP
2B346.18.6e-15561652293
                      EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..E CS
               B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelv 93 
                      +k+++++dv +s  +++p kf++++  +k es+++tl d++ + W+v + y  + + r  + +GW   + +n+L+  D++vF+l ++  + +l+
  TRIUR3_02033-P1 561 IKAMKHNDVYASYFMIIPDKFVKTFL-PK-ESRKMTLWDPQAKPWKVWYEYtGGERPRAAFNAGWGALAMENNLEKWDVCVFELLDQeYNIKLH 652
                      58999*****************8884.43.6789***************99544444599***********************87532444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.6E-21138236IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-20139237IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.393143235IPR003340B3 DNA binding domain
CDDcd100172.06E-17143232No hitNo description
SMARTSM010192.4E-10145235IPR003340B3 DNA binding domain
PfamPF023623.7E-13146232IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-19552654IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.8E-18553653IPR015300DNA-binding pseudobarrel domain
CDDcd100173.79E-20558655No hitNo description
SMARTSM010191.0E-8560657IPR003340B3 DNA binding domain
PROSITE profilePS5086312.139560657IPR003340B3 DNA binding domain
PfamPF023622.1E-12561652IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 673 aa     Download sequence    Send to blast
MGVVDNMQNV KVKEEEDENI NMKGKRKQNK AEGGKKAEEK QNSSKRKMDK NKEEKEKKMR  60
VVDKNDDEKE REDRSKRKEN EKKVKSHMER NEDNDNKKEE QGQREIEKEK VEEEKEINKQ  120
KGRKEEEDSK EKDKDQNDKT NCPHFFRTLI SYSFMEHMTI PVGFHKYLED CTGMVSLRGP  180
SGNKWPVELA KISGELLFAR GWKEFLSDNR IGYGYLLVFR YDGQSQFSVT IFLPSSCEDP  240
YAYLAQPQCK DVDWHQCTNV DGVAPQEEDT HSGTSADGAP QNEASEEEDA SEDEDAEEVE  300
DALSETPGNE EDSECRMCND DALEPVQQQQ EDLRKTDDGF LIGKRARFRK VDDIMAEVDR  360
SKKSKPAERK NSEGPFGDPT SGGGASSDSL AEESEHRPPK KSKAGEIRSP SGDSPSKAAT  420
SSDNFAELDS HPSKESKAEG KSSAPSLIGY TGSSSSASKS VPLKKASKET ISNDNLAGVF  480
APESVCTDLT MWHNSFGKRL SKQNQFPMFN KSNGENQPGR VLIKVMRRLG LMSQRRPVTQ  540
REKEYAMERA HRFKSERPFA IKAMKHNDVY ASYFMIIPDK FVKTFLPKES RKMTLWDPQA  600
KPWKVWYEYT GGERPRAAFN AGWGALAMEN NLEKWDVCVF ELLDQEYNIK LHVHKVVLMI  660
TPCILAPKPR IDE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020169976.10.0uncharacterized protein LOC109755480
TrEMBLT1LBX60.0T1LBX6_TRIUA; Uncharacterized protein
STRINGTRIUR3_02033-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2264526
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34400.12e-13B3 family protein