PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

TRIUR3_01802-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

HB-other

Protein Properties

Length: 1333aa MW: 149588 Da PI: 7.0945

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_01802-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	43.4	5.7e-14	173	224	6	57
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 + ++ q++ Le+++ + +yp+ e+ +e A+++gLt +qV++WF+ rR ke++ TRIUR3_01802-P1 173 KKSPLQIQMLESFYSEVQYPKPEDVTEYAASVGLTYNQVRIWFKERRRKERR 224 66899*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	14.398	165	225	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.11E-13	167	232	IPR009057	Homeodomain-like
SMART	SM00389	8.2E-14	167	229	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	3.0E-14	172	233	IPR009057	Homeodomain-like
CDD	cd00086	3.63E-8	172	215	No hit	No description
Pfam	PF00046	2.5E-11	173	224	IPR001356	Homeobox domain
PROSITE profile	PS50827	10.148	541	600	IPR018501	DDT domain
SMART	SM00571	0.0047	541	600	IPR018501	DDT domain
Pfam	PF02791	3.9E-7	543	595	IPR018501	DDT domain
Pfam	PF15612	1.3E-5	823	854	IPR028942	WHIM1 domain
Pfam	PF15613	1.9E-10	946	1017	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1333 aa Download sequence Send to blast
MVVVLAFFSH QGSVLVCLLL FDLPIRCVLD LLPEIFLNWR MKLLDIWIGW NPVMRTHIRP 60 GGFTMVRREA PICCRNHGTC GHLNFHGVHC GGEGADLASG GGEGEALEEF KFGGAPRVPS 120 LDFHGENLSL NAENSDSTTG EQHLQLQGPT WKENKPQMMA KGFLAKSDNA GTKKSPLQIQ 180 MLESFYSEVQ YPKPEDVTEY AASVGLTYNQ VRIWFKERRR KERRHMEAAE VHMETQASAR 240 SNWPRCSSSR SSNSSQSPMQ GIAGLQPEDD ITLGRSMSLV GEKHTLRSQV LFPKDYILRK 300 VFGKDDPSLG GDFDPLPERA HVHVRGLSLV ALKVKPCKRP DLKLNQPHSS INNSGNYLIF 360 CLMRLIPSQY HVELIADTTG HQSYQDQSVL KKRKIMSPTA QRSTLPFENN DPVRKHGKGK 420 EIQDCSSFID ESGCLRSLRP FEDCGGKLAQ RQTSPRKKVN KKSRPPPSKR KVPCGRATDL 480 TEHPSVECHL SVDESESSEL RTEQATLVDD EELELNLLAR FPPPSVRMKQ PFPTKPWESS 540 PEMVKKLFQV VRFVYTHFGS MDVHPFTFDE FAQAFHEKDS SLLGKVHVSL LKLLMLNTER 600 GSGSVFVPRS SKDNRFLSFL NFIRWEVREQ EFNVNFWIKS LNSLTWVEIL RQVLVASGFG 660 SDHHMLNRNF FNKEKNQMVK YGLRPRTLKG ELFALLSKKG SGGLKVAELA KSPQIIGLNL 720 SGASEVEQLI FSILSSDITL FEKIAPSAYR LRVDPRIKGK EDPRSDTEDS GTVDDDRDAS 780 SSGDESDGPQ ESYAEHESRI VRWRQKNVHK NMNKCSEIDE SYSGERWLLG LMEGEYSDLS 840 IDEKLDCLVA LIDVVSGAGS VPRLEEPQSV LSSIQRAQSH ASGGKIKKCT RTIYQSSDEY 900 LNRPGSSHSF DSSMQGQSGS LRSQDYIADS GANESPTGFA HQPQIVLLGS DRRYNNYWLF 960 LGPCRADDPG HRRVYFESSE DGHWEVIDSP QDLLSLLSVL DIRGTREAHL LASMKKRQSC 1020 LFEGMKKHLE DGCVVALTAS SDSSHSETSS GNRYSPKPSS GDGASPLSDI DSASVPTYLA 1080 GNLQNASSAI GIEVGRRSDE KMSKWERLQA LDKWIWTSFY SSLTAVKCGK RSFKESLVHC 1140 DSCHDLYWRD EKHCRICHST FEVGFDLEER YAIHVATCRE PEDLYDVPNH KVLPSQLQAL 1200 KAAIHAIEAL MPTAAFAGLW MKSSHNLWVK RLRRTSSLPE LLQVLVDFVG AIDEDWLYQS 1260 SSAVSFSSYL DDITVYFQTM PQTTSAVALW VVKLDALIAP HLAQADSGRG LGKGFIQTSM 1320 YLADSQYYVF LPF

Sequence ? help Back to Top

Protein Sequence Length: 1333 aa Download sequence Send to blast

MVVVLAFFSH QGSVLVCLLL FDLPIRCVLD LLPEIFLNWR MKLLDIWIGW NPVMRTHIRP  60
GGFTMVRREA PICCRNHGTC GHLNFHGVHC GGEGADLASG GGEGEALEEF KFGGAPRVPS  120
LDFHGENLSL NAENSDSTTG EQHLQLQGPT WKENKPQMMA KGFLAKSDNA GTKKSPLQIQ  180
MLESFYSEVQ YPKPEDVTEY AASVGLTYNQ VRIWFKERRR KERRHMEAAE VHMETQASAR  240
SNWPRCSSSR SSNSSQSPMQ GIAGLQPEDD ITLGRSMSLV GEKHTLRSQV LFPKDYILRK  300
VFGKDDPSLG GDFDPLPERA HVHVRGLSLV ALKVKPCKRP DLKLNQPHSS INNSGNYLIF  360
CLMRLIPSQY HVELIADTTG HQSYQDQSVL KKRKIMSPTA QRSTLPFENN DPVRKHGKGK  420
EIQDCSSFID ESGCLRSLRP FEDCGGKLAQ RQTSPRKKVN KKSRPPPSKR KVPCGRATDL  480
TEHPSVECHL SVDESESSEL RTEQATLVDD EELELNLLAR FPPPSVRMKQ PFPTKPWESS  540
PEMVKKLFQV VRFVYTHFGS MDVHPFTFDE FAQAFHEKDS SLLGKVHVSL LKLLMLNTER  600
GSGSVFVPRS SKDNRFLSFL NFIRWEVREQ EFNVNFWIKS LNSLTWVEIL RQVLVASGFG  660
SDHHMLNRNF FNKEKNQMVK YGLRPRTLKG ELFALLSKKG SGGLKVAELA KSPQIIGLNL  720
SGASEVEQLI FSILSSDITL FEKIAPSAYR LRVDPRIKGK EDPRSDTEDS GTVDDDRDAS  780
SSGDESDGPQ ESYAEHESRI VRWRQKNVHK NMNKCSEIDE SYSGERWLLG LMEGEYSDLS  840
IDEKLDCLVA LIDVVSGAGS VPRLEEPQSV LSSIQRAQSH ASGGKIKKCT RTIYQSSDEY  900
LNRPGSSHSF DSSMQGQSGS LRSQDYIADS GANESPTGFA HQPQIVLLGS DRRYNNYWLF  960
LGPCRADDPG HRRVYFESSE DGHWEVIDSP QDLLSLLSVL DIRGTREAHL LASMKKRQSC  1020
LFEGMKKHLE DGCVVALTAS SDSSHSETSS GNRYSPKPSS GDGASPLSDI DSASVPTYLA  1080
GNLQNASSAI GIEVGRRSDE KMSKWERLQA LDKWIWTSFY SSLTAVKCGK RSFKESLVHC  1140
DSCHDLYWRD EKHCRICHST FEVGFDLEER YAIHVATCRE PEDLYDVPNH KVLPSQLQAL  1200
KAAIHAIEAL MPTAAFAGLW MKSSHNLWVK RLRRTSSLPE LLQVLVDFVG AIDEDWLYQS  1260
SSAVSFSSYL DDITVYFQTM PQTTSAVALW VVKLDALIAP HLAQADSGRG LGKGFIQTSM  1320
YLADSQYYVF LPF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK373981	0.0	AK373981.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3049P02.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020187489.1	0.0	homeobox-DDT domain protein RLT3-like
TrEMBL	M7YQ38	0.0	M7YQ38_TRIUA; Uncharacterized protein
STRING	TRIUR3_01802-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4556	33	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12750.1	0.0	Homeodomain-like transcriptional regulator