PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_01064-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 162aa    MW: 17090.3 Da    PI: 8.3805
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_01064-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.000455274123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C+ Cg+ F + + L  H  +H
  TRIUR3_01064-P1 52 FVCKTCGRAFASFHALGGHRTSH 74
                     89**********99999988877 PP
2zf-C2H212.60.0004199121123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++Cg  F     L  H+r+H
  TRIUR3_01064-P1  99 HECHICGLGFEMGQALGGHMRRH 121
                      79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.600.0014775IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.395274IPR015880Zinc finger, C2H2-like
PfamPF139127.1E-85276IPR007087Zinc finger, C2H2
SuperFamilySSF576675.25E-752121No hitNo description
PROSITE profilePS5015710.0765274IPR007087Zinc finger, C2H2
PROSITE patternPS0002805474IPR007087Zinc finger, C2H2
PfamPF139126.8E-1198124IPR007087Zinc finger, C2H2
SMARTSM003550.4999121IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.82799126IPR007087Zinc finger, C2H2
PROSITE patternPS000280101121IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MGAGMKHARE EEPTVSLALS LSTDSASSDS GGGALAKRRK GAVVATSGEG EFVCKTCGRA  60
FASFHALGGH RTSHLRGGHG LELGVGVARA IKERKKQRHE CHICGLGFEM GQALGGHMRR  120
HREEMALSGA NDRRVAVLPD QEAGHQTSAA DDQPPVLLEL FV
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3556321e-65AK355632.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1023K12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198431.12e-91zinc finger protein ZAT4-like
TrEMBLA0A446TLA81e-111A0A446TLA8_TRITD; Uncharacterized protein
TrEMBLM8AZK11e-111M8AZK1_TRIUA; Uncharacterized protein
STRINGTRIUR3_01064-P11e-112(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130530117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59820.15e-21C2H2 family protein