PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_01062-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 162aa    MW: 17620.7 Da    PI: 10.7154
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_01062-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.0004393115123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++Cg+ F     L  H+r+H
  TRIUR3_01062-P1  93 HECSICGMGFEMGQALGGHMRRH 115
                      78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.51E-751118No hitNo description
Gene3DG3DSA:3.30.160.608.7E-491118IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.38893120IPR007087Zinc finger, C2H2
PfamPF139121.4E-1093118IPR007087Zinc finger, C2H2
PROSITE patternPS00028095115IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MKRARNEEVL SLALALSTDS STSSTTSADS AGSPAKKARR RTRGAVLATS GEGEFVCKTC  60
GRAXHLRGRH ELDLGVGIAR AISERRRREN KQHECSICGM GFEMGQALGG HMRRHREEMA  120
LRGRGDDDDQ LVWRGVALQP GQVVTGHQAT ANQPPVLLKL FV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18388ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198430.13e-80zinc finger protein ZAT12-like
TrEMBLT1L9C11e-113T1L9C1_TRIUA; Uncharacterized protein
STRINGTRIUR3_01062-P11e-113(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130530117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46080.11e-09C2H2 family protein