PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_01057-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C2H2 | ||||||||
Protein Properties | Length: 111aa MW: 12189.9 Da PI: 10.2204 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.9 | 0.00016 | 69 | 91 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg F L H+r+H TRIUR3_01057-P1 69 HQCHVCGLEFEMGQALGGHMRRH 91 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.598 | 16 | 43 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 7.72E-7 | 16 | 91 | No hit | No description |
SMART | SM00355 | 0.9 | 16 | 38 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 6.3E-10 | 16 | 40 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 18 | 38 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 3.0E-11 | 68 | 94 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.24 | 69 | 91 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.702 | 69 | 96 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 71 | 91 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 111 aa Download sequence Send to blast |
MADRTKKQRR GADGEFVCRT CSRAFPSFQA LGGHRTSHLR GRHGLALGLA AGIDEPSLTK 60 KTVDQKQAHQ CHVCGLEFEM GQALGGHMRR HREQESATTA QAPPVLLQLF V |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU253554 | 1e-116 | EU253554.1 Triticum aestivum C2H2 zinc finger protein (ZFP2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020198422.1 | 2e-66 | zinc finger protein ZAT8-like | ||||
Refseq | XP_020199617.1 | 2e-66 | zinc finger protein ZAT8-like | ||||
TrEMBL | M7ZTS2 | 6e-75 | M7ZTS2_TRIUA; Zinc finger protein 1 | ||||
STRING | TRIUR3_01057-P1 | 9e-76 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1305 | 30 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46080.1 | 1e-19 | C2H2 family protein |