PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_00423-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 721aa    MW: 81315.1 Da    PI: 8.0825
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_00423-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.61.3e-14105192197
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      ff  l++s+++++   ++p ++  ++   +e++ t++l+ +sg+ W v+l   k sg+  +++GWkeF  ++++  g  +vF++dg+s+f   v
  TRIUR3_00423-P1 105 FFRFLMTSSSMEQE--TIPEDCH-KYL--EECTGTVSLRGPSGNLWPVEL--AKISGELCFARGWKEFLCDHRIVYGYLLVFRYDGNSQF--SV 189
                      78899999999999..9998865.664..568889***************..************************************99..66 PP

                      EEE CS
               B3  95 kvf 97 
                      +vf
  TRIUR3_00423-P1 190 TVF 192
                      655 PP
2B335.41.9e-116227001797
                      E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
               B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                      ++p  f+ e+ ++k es+++tl d++ + W+v + y+++ +    +++GW   + +n L+ +D +vF+l + ++ + +++v+
  TRIUR3_00423-P1 622 IIPEMFV-ENFLPK-ESRKMTLWDPQAKPWKVWYEYTGGECPrAAFSAGWGALAMENYLENRDLCVFELLD-DDYNIKLHVY 700
                      7999999.555665.6689***************99555554599***********************886.4554555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.5E-1899196IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-18102197IPR015300DNA-binding pseudobarrel domain
CDDcd100172.26E-15103192No hitNo description
SMARTSM010194.8E-10105195IPR003340B3 DNA binding domain
PfamPF023624.4E-12105191IPR003340B3 DNA binding domain
PROSITE profilePS5086311.11105195IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.7E-16570701IPR015300DNA-binding pseudobarrel domain
CDDcd100171.48E-14576701No hitNo description
PROSITE profilePS5086311.307606703IPR003340B3 DNA binding domain
SMARTSM010196.6E-6611703IPR003340B3 DNA binding domain
SuperFamilySSF1019361.08E-13620701IPR015300DNA-binding pseudobarrel domain
PfamPF023624.3E-9622701IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 721 aa     Download sequence    Send to blast
MGMIDDKQNV KVKEEGGENT NAKEKKKQSK EEGDKKKEVK KMTKYKEKKE RTRGNDKDNE  60
KEKEDQRKRK ENEKKMRAHK EREKKENDKE EELKEQNDTK NCPQFFRFLM TSSSMEQETI  120
PEDCHKYLEE CTGTVSLRGP SGNLWPVELA KISGELCFAR GWKEFLCDHR IVYGYLLVFR  180
YDGNSQFSVT VFLPSSCEAP YAFLAQPQRM GATAVAAKDE NGHTGTNADG TAPQEEDSHI  240
GTGADGTPQN EGEEEDASEE YEGSDNMSVD ADGAGPQKEE EDALSENPDN EEESEWRSAP  300
SQQQKEDQDK IDNGFVVGKR TRFRKVDDIM TEVVRSKKSK AKEGKRHEAQ SSDSKSEGEA  360
LGDSLEKSGL RPPRKSKATE EKRPEAPSGD SLAELVHCSP KKSKAEGKRS TALASKGAAS  420
SDRLKESKRC PPRKPKAAKG KRPQGPCGHS ESEGAESGDS LAELVRRPPK KSRAEGKGSA  480
ASSASKGMTS SHSLAGVLAP ESVCKDLTKL HKSFGKKYSM KAQFPMFNNS NSENQPGRVI  540
VKVQRRPELK SQRRQVTQRD KEYAMDRAQR FQSKRPFVIK EIKHTDVYVS YFMVIDRILL  600
WMDTHILKLH CSLTDRPGTL QIIPEMFVEN FLPKESRKMT LWDPQAKPWK VWYEYTGGEC  660
PRAAFSAGWG ALAMENYLEN RDLCVFELLD DDYNIKLHVY RAVLDITPFA LAPKHHQQGC  720
A
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12127AKEKKKQ
26069KEKEDQRKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020182314.10.0myb-like protein X
TrEMBLT1L7M30.0T1L7M3_TRIUA; Uncharacterized protein
STRINGTRIUR3_00423-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2264526
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.14e-15B3 family protein