PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF267500040CFD_t1
Common NameTRAES_3BF267500040CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 721aa    MW: 82008.3 Da    PI: 7.2415
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF267500040CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS334.52e-1023387091374
                     GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                              l++lL++cAeav  ++++la+++L+ +++++sp+gd +qRla+y++  L+ rl++++s++ + + + + +    +  l+ ++l   
  TRAES3BF267500040CFD_t1 338 LRTLLIHCAEAVFRNNHSLASEILKSIRQHSSPSGDDTQRLAFYLADCLEIRLSGNGSQINQNFIAIPRN---AEYILKLFHLGLT 420
                              6789*********************************************************999888887...788888999999* PP

                     GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAe 170
                              vsP+l+ s+   N++Il+ ++g+ +vHiiDf+i  G+QWp+Ll+++a+R++gpp+lRiTg++ p++g    e+ ++t+ rL ++A+
  TRAES3BF267500040CFD_t1 421 VSPYLRSSYYFSNKTILDVTKGKPQVHIIDFGICFGFQWPSLLKQFADREGGPPKLRITGIELPTPGfrPDEMNNNTRLRLIEYAN 506
                              ******************************************************************9*88899999********** PP

                     GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFler 256
                               ++vpfe++  +++++e++++++++++++E l+Vn+++++++l de++s++s+r++vL+ ++ ++P+++++   + ++n++ Fl r
  TRAES3BF267500040CFD_t1 507 MFKVPFEYRQ-ISSKWESITIKDFNIDKDELLVVNCIHRMKNLGDETTSINSARNRVLNNIRMMKPNIFIHGVVNGSYNTPFFLSR 591
                              **********.7************************************************************************** PP

                     GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342
                              f e ++ y++lfd+l+++ pr++e+r  +Er + + ei n++aceg+er+er e+++ W+ r  +a F+++pl+ ++++ +++++r
  TRAES3BF267500040CFD_t1 592 FKEVMYRYTSLFDMLDKTTPRDNETRLILERDIYKYEILNAIACEGSERIERPESYKIWKVRGLRARFEQLPLNPTIVNGIQHIVR 677
                              ************************************************************************************** PP

                     GRAS 343 kvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                              +++ ++  v+ee++ lvlgWk+r L+++S W+
  TRAES3BF267500040CFD_t1 678 QIYHKEVFVDEEDQFLVLGWKGRILYALSTWK 709
                              ***999*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.627312689IPR005202Transcription factor GRAS
PfamPF035146.8E-100338709IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 721 aa     Download sequence    Send to blast
MGTSDKPSSA DFHNIMANTA GCGACSSQDP MSSTAEYNHS EFVLHPPTPM SYSPAVSIVS  60
SKIGPQLCNV SCDDPSAGWR LISVAEHPRT DSDVTLSYIE QMLMQDTDDK VRAAHGETAI  120
KTVEETFYEV LGQKYPVLPD ILPPCGCDRL KNLNGNVSRP NGKLCSNCSL YISSDDYHPN  180
ENSQASQAPW TLSAIVGEAK KIPLGAEKIE IGLNINSLSI AKKPSRDNHS PHMNEKETIK  240
DASFEVRGRK VFLDKENLDL LEGRRNKQTA IFSDEPIRNE AFDRVLLCSE LKPVHEDIIF  300
QRAMADTSTK YAMKDQGRKL DRQTTRGKTR KKQEVVDLRT LLIHCAEAVF RNNHSLASEI  360
LKSIRQHSSP SGDDTQRLAF YLADCLEIRL SGNGSQINQN FIAIPRNAEY ILKLFHLGLT  420
VSPYLRSSYY FSNKTILDVT KGKPQVHIID FGICFGFQWP SLLKQFADRE GGPPKLRITG  480
IELPTPGFRP DEMNNNTRLR LIEYANMFKV PFEYRQISSK WESITIKDFN IDKDELLVVN  540
CIHRMKNLGD ETTSINSARN RVLNNIRMMK PNIFIHGVVN GSYNTPFFLS RFKEVMYRYT  600
SLFDMLDKTT PRDNETRLIL ERDIYKYEIL NAIACEGSER IERPESYKIW KVRGLRARFE  660
QLPLNPTIVN GIQHIVRQIY HKEVFVDEED QFLVLGWKGR ILYALSTWKP SEIDNEGTDD  720
I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A8e-433427098375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020153698.10.0scarecrow-like protein 9
TrEMBLA0A077RVY70.0A0A077RVY7_WHEAT; Uncharacterized protein
TrEMBLA0A3B6FGG10.0A0A3B6FGG1_WHEAT; Uncharacterized protein
STRINGTRIUR3_06561-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP117882640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-145GRAS family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]